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Coarse-grained modeling and efficient computer simulations are critical to the study of complex molecular processes with many degrees of freedom and multiple spatiotemporal scales. Variational implicit-solvent model (VISM) for biomolecular…

化学物理 · 物理学 2022-10-26 Shuang Liu , Zirui Zhang , Li-Tien Cheng , Bo Li

Current supercomputers often have a heterogeneous architecture using both CPUs and GPUs. At the same time, numerical simulation tasks frequently involve multiphysics scenarios whose components run on different hardware due to multiple…

计算工程、金融与科学 · 计算机科学 2024-12-10 Samuel Kemmler , Christoph Rettinger , Ulrich Rüde , Pablo Cuéllar , Harald Köstler

Graph neural networks are increasingly adopted in trigger systems for collider experiments, where strict latency and throughput constraints render deployment on embedded platforms challenging. As detectors move towards higher granularity,…

硬件体系结构 · 计算机科学 2026-05-12 Marc Neu , Frank Baptist , Thomas Lobmaier , Fabio Papagno , Torben Ferber , Jürgen Becker

Fault-tolerant Quantum Processing Units (QPUs) promise to deliver exponential speed-ups in select computational tasks, yet their integration into modern deep learning pipelines remains unclear. In this work, we take a step towards bridging…

量子物理 · 物理学 2026-05-19 Arthur G. Rattew , Po-Wei Huang , Naixu Guo , Lirandë Pira , Patrick Rebentrost

We present a MATLAB script which can use GPU acceleration to simulate a trapped ion interacting with a low-density cloud of atoms. This script, called atomiongpu.m, can massively parallelize MD simulations of trajectories of a trapped ion…

原子物理 · 物理学 2025-09-17 Saajid Chowdhury , Jesús Pérez-Ríos

As deep neural networks (DNNs) become deeper, the training time increases. In this perspective, multi-GPU parallel computing has become a key tool in accelerating the training of DNNs. In this paper, we introduce a novel methodology to…

数值分析 · 数学 2024-07-08 Chang-Ock Lee , Youngkyu Lee , Jongho Park

Modern deep learning applications urge to push the model inference taking place at the edge devices for multiple reasons such as achieving shorter latency, relieving the burden of the network connecting to the cloud, and protecting user…

分布式、并行与集群计算 · 计算机科学 2019-07-05 Leyuan Wang , Zhi Chen , Yizhi Liu , Yao Wang , Lianmin Zheng , Mu Li , Yida Wang

Our fully kinetic, implicit Particle-in-Cell (PIC) simulations of global magnetospheres on up to 32,768 of El Capitan's AMD Instinct MI300A Accelerated Processing Units (APUs) represent an unprecedented computational capability that…

We provide a preliminary study on utilizing GPU (Graphics Processing Unit) to accelerate computation for three simulation optimization tasks with either first-order or second-order algorithms. Compared to the implementation using only CPU…

分布式、并行与集群计算 · 计算机科学 2024-04-19 Jinghai He , Haoyu Liu , Yuhang Wu , Zeyu Zheng , Tingyu Zhu

With large-scale Integral Field Spectroscopy (IFS) surveys of thousands of galaxies currently under-way or planned, the astronomical community is in need of methods, techniques and tools that will allow the analysis of huge amounts of data.…

天体物理仪器与方法 · 物理学 2015-12-22 Georgios Bekiaris , Karl Glazebrook , Christopher J. Fluke , Roberto Abraham

To respond to the need of efficient training and inference of deep neural networks, a plethora of domain-specific hardware architectures have been introduced, such as Google Tensor Processing Units and NVIDIA Tensor Cores. A common feature…

数据结构与算法 · 计算机科学 2020-07-10 Rezaul Chowdhury , Francesco Silvestri , Flavio Vella

This paper presents a heterogeneous adaptive mesh refinement (AMR) framework for efficient simulation of moderately stiff reactive problems. This framework features an elaborate subcycling-in-time algorithm along with a specialized…

计算物理 · 物理学 2025-06-04 Yuqi Wang , Yadong Zeng , Ralf Deiterding , Jianhan Liang

Computational tools for rigorously verifying the performance of large-scale machine learning (ML) models have progressed significantly in recent years. The most successful solvers employ highly specialized, GPU-accelerated branch and bound…

机器学习 · 计算机科学 2023-09-11 Samuel Chevalier , Ilgiz Murzakhanov , Spyros Chatzivasileiadis

This paper presents a novel, high-performance, graphical processing unit-based algorithm for efficiently solving two-dimensional linear programs in batches. The domain of two-dimensional linear programs is particularly useful due to the…

分布式、并行与集群计算 · 计算机科学 2019-02-14 John Charlton , Steve Maddock , Paul Richmond

Adaptive finite elements combined with geometric multigrid solvers are one of the most efficient numerical methods for problems such as the instationary Navier-Stokes equations. Yet despite their efficiency, computations remain expensive…

数值分析 · 数学 2025-12-23 Manuel Liebchen , Robert Jendersie , Utku Kaya , Christian Lessig , Thomas Richter

Bayesian networks (BNs) are attractive, because they are graphical and interpretable machine learning models. However, exact inference on BNs is time-consuming, especially for complex problems. To improve the efficiency, we propose a fast…

分布式、并行与集群计算 · 计算机科学 2023-03-14 Jiantong Jiang , Zeyi Wen , Atif Mansoor , Ajmal Mian

Matrix decompositions are ubiquitous in machine learning, including applications in dimensionality reduction, data compression and deep learning algorithms. Typical solutions for matrix decompositions have polynomial complexity which…

Purpose: Very fast Monte Carlo (MC) simulations of proton transport have been implemented recently on GPUs. However, these usually use simplified models for non-elastic (NE) proton-nucleus interactions. Our primary goal is to build a…

医学物理 · 物理学 2015-06-11 H. Wan Chan Tseung , J. Ma , C. Beltran

Neural representations have emerged as a new paradigm for applications in rendering, imaging, geometric modeling, and simulation. Compared to traditional representations such as meshes, point clouds, or volumes they can be flexibly…

计算机视觉与模式识别 · 计算机科学 2021-05-07 Julien N. P. Martel , David B. Lindell , Connor Z. Lin , Eric R. Chan , Marco Monteiro , Gordon Wetzstein

We implement a quantum optimal control algorithm based on automatic differentiation and harness the acceleration afforded by graphics processing units (GPUs). Automatic differentiation allows us to specify advanced optimization criteria and…

量子物理 · 物理学 2017-04-19 Nelson Leung , Mohamed Abdelhafez , Jens Koch , David I. Schuster