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The random transitions of ion channels between conducting and non-conducting states generate a source of internal fluctuations in a neuron, known as channel noise. The standard method for modeling fluctuations in the states of ion channels…

神经元与认知 · 定量生物学 2011-04-27 Joshua H. Goldwyn , Nikita S. Imennov , Michael Famulare , Eric Shea-Brown

Neuronal models based on the Hodgkin-Huxley equation form a fundamental framework in the field of computational neuroscience. While the neuronal state is often modeled deterministically, experimental recordings show stochastic fluctuations,…

神经元与认知 · 定量生物学 2018-10-26 Pavol Bauer , Stefan Engblom , Sanja Mikulovic , Aleksandar Senek

A position-dependent stochastic diffusion model of gating in ion channels is developed by considering the spatial variation of the diffusion coefficient between the closed and open states. It is assumed that a sensor which regulates the…

介观与纳米尺度物理 · 物理学 2014-07-24 Samuel Robert Vaccaro

Electrical signaling via voltage-gated ion channels depends upon the function of the voltage sensor (VS), identified with the S1-S4 domain of voltage-gated K channels. Here we investigate some physical aspects of the sliding-helix model of…

生物大分子 · 定量生物学 2015-03-13 Alexander Peyser , Wolfgang Nonner

The generation and conduction of action potentials represents a fundamental means of communication in the nervous system, and is a metabolically expensive process. In this paper, we investigate the energy efficiency of neural systems in a…

神经元与认知 · 定量生物学 2014-04-23 Lianchun Yu , Liwei Liu

Transmembrane ion flow through channel proteins undergoing density fluctuations may cause lateral gradients of the electrical potential across the membrane giving rise to electrophoresis of charged channels. A model for the dynamics of the…

斑图形成与孤子 · 物理学 2009-11-11 Markus Hilt , Walter Zimmermann

The physiology of voltage gated ion channels is complex and insights into their gating mechanism is incomplete. Their function is best represented by Markov models with relatively large number of distinct states that are connected by…

亚细胞过程 · 定量生物学 2013-12-17 Febe Francis , Míriam R. García , Oliver Mason , Richard H. Middleton

We compare and contrast spiral- and scroll-wave dynamics in five different mathematical models for cardiac tissue. The first is the TP06 model, due to ten Tusscher and Panfilov, which is based on the Hodgkin-Huxley formalism; the remaining…

生物物理 · 物理学 2020-09-23 Mahesh Kumar Mulimani , Alok Ranjan Nayak , Rahul Pandit

The experimental data of N. Takahashi, Y. Hanyu, T. Musha, R. Kubo, and G. Matsumoto, Physica D \textbf{43}, 318 (1990), on the response of squid giant axons stimulated by periodic sequence of short current pulses is interpreted within the…

生物物理 · 物理学 2010-12-20 L. S. Borkowski

One of the most celebrated successes in computational biology is the Hodgkin-Huxley framework for modeling electrically active cells. This framework, expressed through a set of differential equations, synthesizes the impact of ionic…

神经元与认知 · 定量生物学 2015-05-28 Joshua H. Goldwyn , Eric Shea-Brown

The classical Hodgkin-Huxley (HH) point-neuron model of action potential generation is four-dimensional. It consists of four ordinary differential equations describing the dynamics of the membrane potential and three gating variables…

神经元与认知 · 定量生物学 2023-02-16 Ulises Chialva , Vicente González Boscá , Horacio G. Rotstein

A model of mobile, charged ion channels in a fluid membrane is studied. The channels may switch between an open and a closed state according to a simple two-state kinetics with constant rates. The effective electrophoretic charge and the…

软凝聚态物质 · 物理学 2009-11-07 Stephan C. Kramer , Reiner Kree

The influence of intrinsic channel noise on the spontaneous spiking activity of poisoned excitable membrane patches is studied by use of a stochastic generalization of the Hodgkin-Huxley model. Internal noise stemming from the stochastic…

亚细胞过程 · 定量生物学 2007-05-23 Gerhard Schmid , Igor Goychuk , Peter Hanggi

The systematic shifts of the transition frequencies in the molecular hydrogen ions are of relevance to ultra-high-resolution radio-frequency, microwave and optical spectroscopy of these systems, performed in ion traps. We develop the…

原子物理 · 物理学 2015-06-16 Dimitar Bakalov , Stephan Schiller

Using a stochastic generalization of the Hodgkin–Huxley model, we consider the influence of intrinsic channel noise on the synchronization between the spiking activity of the excitable membrane and an externally applied periodic…

生物物理 · 物理学 2007-05-23 Gerhard Schmid , Igor Goychuk , Peter Hanggi

The temporal dynamics of double ionization of H2 has been investigated both experimentally and theoretically with few-cycle laser pulses. The main observables are the proton spectra associated to the H^+ + H^+ fragmentation channel. The…

量子物理 · 物理学 2008-09-23 Sébastien Saugout , Eric Charron , Christian Cornaggia

We suggest that the propagation of the action potential is driven by a pressure pulse propagating in the axoplasm along the axon length. The pressure pulse mechanically activates Na ion channels embedded in the axon membrane. This…

生物物理 · 物理学 2009-05-15 Marat M. Rvachev

Spectral properties of the Hamiltonian function which characterizes a trapped ion are investigated. In order to study semiclassical dynamics of trapped ions, coherent state orbits are introduced as sub-manifolds of the quantum state space,…

量子物理 · 物理学 2023-02-28 Bogdan M. Mihalcea

An approximate microscopic model is proposed for the explanation of the electric signal dU = k_B dT/(2e) observed by A.S. Rybalko in He II in the experiments with standing half-wave of second sound. The model is based on the idea, due to…

介观与纳米尺度物理 · 物理学 2011-03-15 Maksim D. Tomchenko

The opening rate of voltage-gated potassium ion channels exhibits a characteristic, knee-like turnover where the common exponential voltage-dependence changes suddenly into a linear one. An explanation of this puzzling crossover is put…

生物物理 · 物理学 2009-11-07 Igor Goychuk , Peter Hänggi