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Protein structure similarity search (PSSS), which tries to search proteins with similar structures, plays a crucial role across diverse domains from drug design to protein function prediction and molecular evolution. Traditional…

机器学习 · 计算机科学 2024-11-14 Jin Han , Wu-Jun Li

Similarity search methods are widely used as kernels in various machine learning applications. Nearest neighbor search (NNS) algorithms are often used to retrieve similar entries, given a query. While there exist efficient techniques for…

数据库 · 计算机科学 2010-06-18 Rajendra Shinde , Ashish Goel , Pankaj Gupta , Debojyoti Dutta

Similarity joins are a fundamental database operation. Given data sets S and R, the goal of a similarity join is to find all points x in S and y in R with distance at most r. Recent research has investigated how locality-sensitive hashing…

数据结构与算法 · 计算机科学 2018-04-17 Samuel McCauley , Francesco Silvestri

Cross-modal hashing is an important approach for multimodal data management and application. Existing unsupervised cross-modal hashing algorithms mainly rely on data features in pre-trained models to mine their similarity relationships.…

信息检索 · 计算机科学 2022-07-12 Liang Li , Baihua Zheng , Weiwei Sun

Approximate Nearest neighbor search (ANNS) is fundamental and essential operation in applications from many domains, such as databases, machine learning, multimedia, and computer vision. Although many algorithms have been continuously…

数据库 · 计算机科学 2016-10-11 Wen Li , Ying Zhang , Yifang Sun , Wei Wang , Wenjie Zhang , Xuemin Lin

The adoption of an appropriate approximate similarity search method is an essential prereq-uisite for developing a fast and efficient CBIR system, especially when dealing with large amount ofdata. In this study we implement a web image…

计算机视觉与模式识别 · 计算机科学 2021-05-05 Alessio Schiavo , Filippo Minutella , Mattia Daole , Marsha Gomez Gomez

We introduce an open source python framework named PHS - Parallel Hyperparameter Search to enable hyperparameter optimization on numerous compute instances of any arbitrary python function. This is achieved with minimal modifications inside…

机器学习 · 计算机科学 2020-02-28 Peter Michael Habelitz , Janis Keuper

Unsupervised hashing has attracted much attention for binary representation learning due to the requirement of economical storage and efficiency of binary codes. It aims to encode high-dimensional features in the Hamming space with…

计算机视觉与模式识别 · 计算机科学 2022-09-01 Xiaoqin Wang , Chen Chen , Rushi Lan , Licheng Liu , Zhenbing Liu , Huiyu Zhou , Xiaonan Luo

Large scale agglomerative clustering is hindered by computational burdens. We propose a novel scheme where exact inter-instance distance calculation is replaced by the Hamming distance between Kernelized Locality-Sensitive Hashing (KLSH)…

机器学习 · 计算机科学 2013-01-17 Boyi Xie , Shuheng Zheng

In this study, we propose the lopsided HSS (LHSS) iteration method for solving a class of complex symmetric indefinite systems of linear equations. This method employs an alternating iterative scheme, where each iteration entails solving…

数值分析 · 数学 2025-11-27 Yusong Zhang , Zeng-Qi Wang

We show how perceptual embeddings of the visual system can be constructed at inference-time with no training data or deep neural network features. Our perceptual embeddings are solutions to a weighted least squares (WLS) problem, defined at…

计算机视觉与模式识别 · 计算机科学 2023-10-11 Daniel Severo , Lucas Theis , Johannes Ballé

This paper presents a novel multicriteria shortest path search algorithm called Hierarchical MLS. The distinguishing feature of the algorithm is the multilayered structure of compressed k-Path-Cover graphs it operates on. In addition to…

数据结构与算法 · 计算机科学 2025-03-18 Temirlan Kurbanov , Linxiao Miao , Jiří Vokřínek

Integer Linear Programs (ILPs) are powerful tools for modeling and solving a large number of combinatorial optimization problems. Recently, it has been shown that Large Neighborhood Search (LNS), as a heuristic algorithm, can find high…

人工智能 · 计算机科学 2024-01-17 Taoan Huang , Aaron Ferber , Yuandong Tian , Bistra Dilkina , Benoit Steiner

Correlation clustering is perhaps the most natural formulation of clustering. Given $n$ objects and a pairwise similarity measure, the goal is to cluster the objects so that, to the best possible extent, similar objects are put in the same…

数据结构与算法 · 计算机科学 2013-12-19 Francesco Bonchi , David García-Soriano , Konstantin Kutzkov

Locality-sensitive hashing (LSH) has found widespread use as a fundamental primitive, particularly to accelerate nearest neighbor search. An LSH scheme for a similarity function $S:\mathcal{X} \times \mathcal{X} \to [0,1]$ is a distribution…

数据结构与算法 · 计算机科学 2026-05-13 Flavio Chierichetti , Mirko Giacchini , Ravi Kumar , Erasmo Tani

Data series similarity search is a core operation for several data series analysis applications across many different domains. However, the state-of-the-art techniques fail to deliver the time performance required for interactive…

数据库 · 计算机科学 2021-10-15 Botao Peng , Panagiota Fatourou , Themis Palpanas

As data volumes continue to grow, searches in data are becoming increasingly time-consuming. Classical index structures for neighbor search are no longer sustainable due to the "curse of dimensionality". Instead, approximated index…

机器学习 · 计算机科学 2021-11-17 Li Wang , Lilon Wangner

Hashing technology has been widely used in image retrieval due to its computational and storage efficiency. Recently, deep unsupervised hashing methods have attracted increasing attention due to the high cost of human annotations in the…

计算机视觉与模式识别 · 计算机科学 2021-08-24 Qinghong Lin , Xiaojun Chen , Qin Zhang , Shangxuan Tian , Yudong Chen

We propose a family of very efficient hierarchical indexing schemes for ungapped, score matrix-based similarity search in large datasets of short (4-12 amino acid) protein fragments. This type of similarity search has importance in both…

数据结构与算法 · 计算机科学 2007-09-04 Aleksandar Stojmirovic , Vladimir Pestov

Motivated by a real-world application, we model and solve a complex staff scheduling problem. Tasks are to be assigned to workers for supervision. Multiple tasks can be covered in parallel by a single worker, with worker shifts being…

离散数学 · 计算机科学 2023-02-10 Martin Gutjahr , Sophie N. Parragh , Fabien Tricoire