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Trying to identify the entropy production within a cell has been part of debates and studies in the last century. First the idea was to make a resemblance of a cell with a Carnot engine, which is the most thermodynamically perfect machine.…

生物物理 · 物理学 2017-12-13 Araceli Venegas-Gomez

Entropy generation in a chemical reaction is analyzed without using the general formalism of non-equilibrium thermodynamics at a level adequate for advanced undergraduates. In a first approach to the problem, the phenomenological kinetic…

综合物理 · 物理学 2015-06-11 E. N. Miranda

All cells derive nutrition by absorbing some chemical and energy resources from the environment; these resources are used by the cells to reproduce the chemicals within them, which in turn leads to an increase in their volume. In this…

细胞行为 · 定量生物学 2015-05-27 Yohei Kondo , Kunihiko Kaneko

Cells can be considered as systems that utilize changes in thermodynamic entropy as information. Therefore, they serve as useful models for investigating the relationships between entropy production and information transmission, i.e.,…

分子网络 · 定量生物学 2017-03-09 Tatsuaki Tsuruyama

Chemotactic active particles, such as bacteria and cells, exhibit an adaptive run-and-tumble motion, giving rise to complex emergent behaviors in response to external chemical fields. This motion is generated by the conversion of internal…

软凝聚态物质 · 物理学 2024-02-06 Minh D. N. Nguyen , Phuc H. Pham , Khang V. Ngo , Van H. Do , Shengkai Li , Trung V. Phan

Entropy of the cell fluid model with Curie-Weiss interaction is obtained in analytical form as a function of temperature and chemical potential. A parametric equation is derived representing the entropy as a function of density. Features of…

统计力学 · 物理学 2025-10-28 R. V. Romanik , O. A. Dobush , M. P. Kozlovskii , I. V. Pylyuk , M. A. Shpot

We evaluate entropy production in a photovoltaic cell that is modeled by four electronic levels resonantly coupled to thermally populated field modes at different temperatures. We use a formalism recently proposed, the so-called multiple…

介观与纳米尺度物理 · 物理学 2017-05-22 Mohammad H. Ansari

We quantify the amount of regulation required to control growth in living cells by a Maximum Entropy approach to the space of underlying metabolic states described by genome-scale models. Results obtained for E. coli and human cells are…

分子网络 · 定量生物学 2017-07-19 Daniele De Martino , Fabrizio Capuani , Andrea De Martino

We study an optimal control problem arising from a resource allocation problem in cellular metabolism. A minimalistic model that describes the production of enzymatic vs. non-enzymatic biomass components from a single nutrient source is…

最优化与控制 · 数学 2017-04-10 Steffen Waldherr , Henning Lindhorst

Entropy serves as a central observable in equilibrium thermodynamics. However, many biological and ecological systems operate far from thermal equilibrium. Here we show that entropy production can characterize the behavior of such…

统计力学 · 物理学 2015-03-17 Benjamin Andrae , Jonas Cremer , Tobias Reichenbach , Erwin Frey

Cellular development follows a stochastic yet rule-governed trajectory, though the underlying principles remain elusive. Here, we propose that cellular development follows paths of least action, aligning with foundational physical laws that…

生物物理 · 物理学 2025-04-14 Rohola Zandie , Farhan Khodaee , Yufan Xia , Elazer R. Edelman

Cells generally convert nutrient resources to useful products via energy transduction. Accordingly, the thermodynamic efficiency of this conversion process is one of the most essential characteristics of living organisms. However, although…

生物物理 · 物理学 2016-05-04 Yusuke Himeoka , Kunihiko Kaneko

Research on the birth and evolution of life are reviewed with reference to the maximum entropy production principle (MEPP). It has been shown that this principle is essential for consistent understanding of the birth and evolution of life.…

生物物理 · 物理学 2025-04-22 Yasuji Sawada , Yasukazu Daigaku , Kenji Toma

Living systems maintain or increase local order by working against the Second Law of Thermodynamics. Thermodynamic consistency is restored as they dissipate heat, thereby increasing the net entropy of their environment. Recently introduced…

生物物理 · 物理学 2021-05-03 Dominic J. Skinner , Jörn Dunkel

Living systems operate far from thermal equilibrium by converting the chemical potential of ATP into mechanical work to achieve growth, replication or locomotion. Given time series observations of intra-, inter- or multicellular processes,…

生物物理 · 物理学 2021-11-03 Dominic J. Skinner , Jörn Dunkel

We consider the efficiency of chemical energy extraction from the environment by the growth of a copolymer made of two constituent units in the entropy-driven regime. We show that the thermodynamic nonlinearity associated with the…

统计力学 · 物理学 2015-05-13 Massimiliano Esposito , Katja Lindenberg , Christian Van den Broeck

The rate of entropy production by a stochastic process quantifies how far it is from thermodynamic equilibrium. Equivalently, entropy production captures the degree to which detailed balance and time-reversal symmetry are broken. Despite…

统计力学 · 物理学 2020-12-02 Luca Cocconi , Rosalba Garcia-Millan , Zigan Zhen , Bianca Buturca , Gunnar Pruessner

The hotness of the sun and the coldness of the outer space are inexhaustible thermodynamic resources for human beings. From a thermodynamic point of view, any energy conversion systems that receive energy from the sun and/or dissipate…

应用物理 · 物理学 2018-05-08 Bolin Liao

The stochastic entropy generated during the evolution of a system interacting with an environment may be separated into three components, but only two of these have a non-negative mean. The third component of entropy production is…

统计力学 · 物理学 2013-05-30 Ian J. Ford , Richard E. Spinney

The problem of estimating entropy production from incomplete information in stochastic thermodynamics is essential for theory and experiments. Whereas a considerable amount of work has been done on this topic, arguably, most of it is…

统计力学 · 物理学 2024-12-17 Pedro E. Harunari , Carlos E. Fiore , Andre C. Barato
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