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In this article, we apply the binary level set method to the Variational Implicit Solvent Model (VISM), which is a theoretical and computational tool to study biomolecular systems with complex topology. Central in VISM is an effective free…

数值分析 · 数学 2024-03-11 Zirui Zhang , Li-Tien Cheng

Energy spectroscopy is a powerful tool with diverse applications across various disciplines. The advent of programmable digital quantum simulators opens new possibilities for conducting spectroscopy on various models using a single device.…

Variational method is applied to describe Bose-Einstein condensates (BEC) interacting via a pseudo-potential, taking into account quantum fluctuations around the mean field by the Gaussian approximation. Contributions from the pair-wise…

凝聚态物理 · 物理学 2007-05-23 Y. Tsue , D. Vautherin , T. Matsui

Vibrational-excitation cross sections of ground electronic state of carbon dioxide molecule by electron-impact through the CO2-(2\Pi) shape resonance is considered in the separation of the normal modes approximation. Resonance curves and…

化学物理 · 物理学 2016-11-01 V. Laporta , J. Tennyson , R. Celiberto

Despite the popularity of scaled harmonic frequency calculations in chemistry, sparse benchmarking is available to guide users on appropriate level of theory and basis set choices (model chemistry). Here, we assess the performance of over…

化学物理 · 物理学 2023-02-10 Juan C. Zapata Trujillo , Laura K. McKemmish

To expand the existing QUEST database of accurate vertical transition energies [\href{https://doi.org/10.1002/wcms.1517}{V\'eril et al.~\textit{WIREs Comput.~Mol.~Sci.} \textbf{2021}, \textit{11}, e1517}], we have modeled more than 100…

化学物理 · 物理学 2024-01-26 Pierre-François Loos , Denis Jacquemin

We present a novel hierarchical quantum master equation (HQME) approach which provides a numerically exact description of nonequilibrium charge transport in nanosystems with electronic-vibrational coupling. In contrast to previous work…

介观与纳米尺度物理 · 物理学 2018-06-20 C. Schinabeck , R. Härtle , M. Thoss

Matter-wave interferometry is a highly sensitive tool to measure small perturbations in a quantum system. This property allows the creation of precision sensors for dephasing mechanisms such as mechanical vibrations. They are a challenge…

Approximate Bayesian Computation is widely used to infer the parameters of discrete-state continuous-time Markov networks. In this work, we focus on models that are governed by the Chemical Master Equation (the CME). Whilst originally…

定量方法 · 定量生物学 2020-01-10 Christopher Lester

Extensions and improvements of empirical force fields are discussed in view of applications to computational vibrational spectroscopy and reactive molecular dynamics simulations. Particular focus is on quantitative studies which make…

化学物理 · 物理学 2020-07-08 D. Koner , M. S. Salehi , P. Mondal , M. Meuwly

Quantum computing has recently been emerging in theoretical chemistry as a realistic avenue meant to offer computational speedup to challenging eigenproblems in the context of strongly-correlated molecular systems or extended materials.…

量子物理 · 物理学 2026-03-05 Joachim Knapik , Bruno Senjean , Benjamin Lasorne , Yohann Scribano

We discuss semiempirical approaches and parametric methods developed for modeling molecular vibronic spectra. These methods, together with databases of molecular fragments, have proved efficient and flexible for solving various problems…

化学物理 · 物理学 2007-05-23 S. A. Astakhov , V. I. Baranov , L. A. Gribov

We propose an algorithm for molecular dynamics or Monte Carlo simulations that uses an interpolation procedure to estimate potential energy values from energies and gradients evaluated previously at points of a simplicial mesh. We chose an…

计算物理 · 物理学 2020-01-07 Konstantin Karandashev , Jiri Vanicek

Oscillatory chemical reactions often serve as a timing clock of cellular processes in living cells. The temporal dynamics of protein concentration levels is thus of great interest in biology. Here we propose a theoretical framework to…

系统与控制 · 计算机科学 2015-03-20 Yutaka Hori , Shinji Hara

We introduce a framework for the calculation of ground and excited state energies of bosonic systems suitable for near-term quantum devices and apply it to molecular vibrational anharmonic Hamiltonians. Our method supports generic reference…

量子物理 · 物理学 2020-06-24 Pauline J. Ollitrault , Alberto Baiardi , Markus Reiher , Ivano Tavernelli

The standard approach to analyzing brain electrical activity is to examine the spectral density function (SDF) and identify predefined frequency bands that have the most substantial relative contributions to the overall variance of the…

统计方法学 · 统计学 2021-03-26 Guillermo Granados-Garcia , Mark Fiecas , Babak Shahbaba , Norbert Fortin , Hernando Ombao

A multiscale QM/classical approach is presented, that is able to model the optical properties of complex nanostructures composed of a molecular system adsorbed on metal nanoparticles. The latter are described by a combined…

Observation of the fine structures (anisotropies, polarization, spectral distortions) of the Cosmic Microwave Background (CMB) is hampered by instabilities, 1/f noise and asymmetries of the radiometers used to carry on the measurements.…

The system of two $Q$-deformed oscillators coupled so that the total Hamiltonian has the su$_Q$(2) symmetry is proved to be equivalent, to lowest order approximation, to a system of two identical Morse oscillators coupled by the…

量子物理 · 物理学 2009-10-30 Dennis Bonatsos , C. Daskaloyannis , P. Kolokotronis

We present initial results regarding the existence, stability and interaction of linear and nonlinear vibrational modes in a system of two coupled, one dimensional lattices with unequal numbers of masses. The effects on these nonlinear…

生物物理 · 物理学 2007-05-23 Kyle Forinash
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