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The process of `Evolutionary Diffusion', i.e. reproduction with local mutation but without selection in a biological population, resembles standard Diffusion in many ways. However, Evolutionary Diffusion allows the formation of local peaks…

种群与进化 · 定量生物学 2007-05-23 Daniel John Lawson , Henrik Jeldtoft Jensen

Early brain connectivity development consists of multiple stages: birth of neurons, their migration and the subsequent growth of axons and dendrites. Each stage occurs within a certain period of time depending on types of neurons and…

神经元与认知 · 定量生物学 2015-03-16 Sol Lim , Marcus Kaiser

We report a new approach to achieve growth of highly crystalline nickel nanoparticles over an extended range of sizes (up to 100 nm in diameter) and time scales (up to several hours) by diffusional transport of constituent atoms. The…

材料科学 · 物理学 2013-04-23 Igor Sevonkaev , Vladimir Privman , Dan Goia

We typically think of cells as responding to external signals independently by regulating their gene expression levels, yet they often locally exchange information and coordinate. Can such spatial coupling be of benefit for conveying…

分子网络 · 定量生物学 2015-01-19 Thomas R. Sokolowski , Gašper Tkačik

Axons functionally link the somato-dendritic compartment to synaptic terminals. Structurally and functionally diverse, they accomplish a central role in determining the delays and reliability with which neuronal ensembles communicate. By…

神经元与认知 · 定量生物学 2019-05-07 Pepe Alcami , Ahmed El Hady

Recently proposed budding tree is a decision tree algorithm in which every node is part internal node and part leaf. This allows representing every decision tree in a continuous parameter space, and therefore a budding tree can be jointly…

机器学习 · 计算机科学 2014-12-22 Ozan İrsoy , Ethem Alpaydın

Forecasting the progression of neurodegenerative diseases, such as Parkinson's disease, is essential for effective long-term planning and personalized therapeutic intervention. Existing systems typically produce scalar clinical scores that…

机器学习 · 计算机科学 2026-05-29 Danylo Boiko , Viktoriia Mishkurova

The complexity of gene regulatory networks in multicellular organisms makes interpretable low-dimensional models highly desirable. An attractive geometric picture, attributed to Waddington, visualizes the differentiation of a cell into…

生物物理 · 物理学 2024-12-12 Gautam Reddy

A limited mobility nonequilibrium solid-on-solid dynamical model for kinetic surface growth is introduced as a simple description for the morphological evolution of a growing interface under random vapor deposition and surface diffusion…

统计力学 · 物理学 2009-10-31 S. Das Sarma , P. Punyindu

Modeling the spontaneous evolution of morphology in natural systems and its preservation by proportionate growth remains a major scientific challenge. Yet, it is conceivable that if the basic mechanisms of growth and the coupled kinetic…

软凝聚态物质 · 物理学 2020-12-30 Virginia von Streng , Rami Abi-Akl , Bianca Giovanardi , Tal Cohen

The extracellular space has an ambiguous role in neuroscience. It is present in every physiologically relevant system and often used as a measurement site in experimental recordings, but it has received subordinate attention compared to the…

神经元与认知 · 定量生物学 2017-05-02 Jurgis Pods

How does growth encode form in developing organisms? Many different spatiotemporal growth profiles may sculpt tissues into the same target 3D shapes, but only specific growth patterns are observed in animal and plant development. In…

软凝聚态物质 · 物理学 2023-02-16 Dillon J. Cislo , Anastasios Pavlopoulos , Boris I. Shraiman

Stable diffusion models have ushered in a new era of advancements in image generation, currently reigning as the state-of-the-art approach, exhibiting unparalleled performance. The process of diffusion, accompanied by denoising through…

计算机视觉与模式识别 · 计算机科学 2024-10-29 Andras Horvath

Diffusion models, a powerful and universal generative AI technology, have achieved tremendous success in computer vision, audio, reinforcement learning, and computational biology. In these applications, diffusion models provide flexible…

机器学习 · 计算机科学 2024-04-12 Minshuo Chen , Song Mei , Jianqing Fan , Mengdi Wang

Motivated by recent experiments on multi-component membranes, the growth kinetics of domains on vesicles is theoretically studied. It is known that the steady-state rate of coalescence cannot be obtained by taking the long-time limit of the…

软凝聚态物质 · 物理学 2013-04-26 Kazuhiko Seki , Shigeyuki Komura , Sanoop Ramachandran

Diffusion generative models have emerged as a powerful framework for addressing problems in structural biology and structure-based drug design. These models operate directly on 3D molecular structures. Due to the unfavorable scaling of…

生物大分子 · 定量生物学 2024-05-10 Ian Dunn , David Ryan Koes

We introduce a novel score-based diffusion framework named Twigs that incorporates multiple co-evolving flows for enriching conditional generation tasks. Specifically, a central or trunk diffusion process is associated with a primary…

机器学习 · 计算机科学 2024-11-01 Giangiacomo Mercatali , Yogesh Verma , Andre Freitas , Vikas Garg

We provide a brief review of the common assumptions about biological learning with findings from experimental neuroscience and contrast them with the efficiency of gradient-based learning in recurrent neural networks. The key issues…

Thin film coatings have been essential in development of several micro and nano-scale devices. To realize thin film coatings various deposition techniques are employed, each yielding surface morphologies with different characteristics of…

材料科学 · 物理学 2016-11-18 Murat Yuksel , Tansel Karabacak , Hasan Guclu

Existing approaches to modeling the dynamics of brain tumor growth, specifically glioma, employ biologically inspired models of cell diffusion, using image data to estimate the associated parameters. In this work, we propose an alternative…