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Computer simulation has become one of the most important tools in scientific research in many disciplines. Benefiting from the dynamical trajectories regulated by versatile interatomic interactions, various material properties can be…

材料科学 · 物理学 2024-11-28 Y. -C. Hu , J. Tian

Mathematical modeling is a powerful tool in rheology, and we present pyRheo, an open-source package for Python designed to streamline the analysis of creep, stress relaxation, oscillation, and rotation tests. pyRheo contains a comprehensive…

软凝聚态物质 · 物理学 2024-12-23 Isaac Y. Miranda-Valdez , Aaro Niinistö , Tero Mäkinen , Juha Lejon , Juha Koivisto , Mikko J. Alava

We present SIPGI, a spectroscopic pipeline to reduce optical/near-infrared data from slit-based spectrographs. SIPGI is a complete spectroscopic data reduction environment which retains the high level of flexibility and accuracy typical of…

天体物理仪器与方法 · 物理学 2022-09-13 A. Gargiulo , M. Fumana , S. Bisogni , P. Franzetti , L. P. Cassarà , B. Garilli , M. Scodeggio , G. Vietri

Motivation: The ability to perform operations on encrypted data has a growing number of applications in bioinformatics, with implications for data privacy in health care and biosecurity. The SEAL library is a popular implementation of fully…

定量方法 · 定量生物学 2018-03-07 Alexander J. Titus , Shashwat Kishore , Todd Stavish , Stephanie M. Rogers , Karl Ni

Large databases such as aflowlib.org provide valuable data sources for discovering material trends through machine learning. Although a REST API and query language are available, there is a learning curve associated with the AFLUX language…

数据库 · 计算机科学 2017-10-03 Conred W. Rosenbrock

The Protein Secondary Structure Visualizer ProS2Vi is a novel Python-based visualization tool designed to enhance the analysis and accessibility of protein secondary structures calculated and identified by the Dictionary of Secondary…

生物大分子 · 定量生物学 2024-08-08 Luckman Qasim , Laleh Alisaraie

This paper describes PyOED, a highly extensible scientific package that enables developing and testing model-constrained optimal experimental design (OED) for inverse problems. Specifically, PyOED aims to be a comprehensive Python toolkit…

数学软件 · 计算机科学 2023-12-20 Abhijit Chowdhary , Shady E. Ahmed , Ahmed Attia

The ever-increasing quality and complexity of astronomical data underscores the need for new and powerful data analysis applications. This need has led to the development of Sherpa, a modeling and fitting program in the CIAO software…

天体物理学 · 物理学 2009-11-07 Peter E. Freeman , Stephen Doe , Aneta Siemiginowska

Most of the solar physicists use very expensive software for data reduction and visualization. We present hereafter a reliable freeware solution based on the Python language. This is made possible by the association of the latter with a…

天体物理学 · 物理学 2007-12-11 F. Paletou , R. Rezaei , L. Leger

This paper introduces PyGAD, an open-source easy-to-use Python library for building the genetic algorithm. PyGAD supports a wide range of parameters to give the user control over everything in its life cycle. This includes, but is not…

神经与进化计算 · 计算机科学 2021-06-14 Ahmed Fawzy Gad

The increasing availability of high-quality optical and near-infrared spectroscopic data, as well as advances in modelling techniques, have greatly expanded the scientific potential of spectroscopic studies. However, the software tools…

天体物理仪器与方法 · 物理学 2025-12-23 Daniele Gasparri , Lorenzo Morelli , Umberto Battino , Jairo Méndez Abreu , Adriana de Lorenzo-Cáceres

Integrating deep learning techniques, particularly language models (LMs), with knowledge representation techniques like ontologies has raised widespread attention, urging the need of a platform that supports both paradigms. Although…

人工智能 · 计算机科学 2024-03-12 Yuan He , Jiaoyan Chen , Hang Dong , Ian Horrocks , Carlo Allocca , Taehun Kim , Brahmananda Sapkota

PySymmPol is a Python package designed for efficient manipulation of symmetric polynomials. It provides functionalities for working with various types of symmetric polynomials, including elementary, homogeneous, monomial symmetric, (skew-)…

组合数学 · 数学 2024-06-03 Thiago Araujo

We introduce BlaBla, an open-source Python library for extracting linguistic features with proven clinical relevance to neurological and psychiatric diseases across many languages. BlaBla is a unifying framework for accelerating and…

计算与语言 · 计算机科学 2020-05-21 Abhishek Shivkumar , Jack Weston , Raphael Lenain , Emil Fristed

The $\texttt{torch-choice}$ is an open-source library for flexible, fast choice modeling with Python and PyTorch. $\texttt{torch-choice}$ provides a $\texttt{ChoiceDataset}$ data structure to manage databases flexibly and…

机器学习 · 计算机科学 2025-06-05 Tianyu Du , Ayush Kanodia , Susan Athey

There are numerous approaches to building analysis applications across the high-energy physics community. Among them are Python-based, or at least Python-driven, analysis workflows. We aim to ease the adoption of a Python-based analysis…

计算物理 · 物理学 2018-04-25 David Lange

Writing generic data processing pipelines requires that the algorithmic code does not ever have to know about data formats of files, or the locations of those files. At LSST we have a software system known as "the Data Butler," that…

天体物理仪器与方法 · 物理学 2018-12-20 Tim Jenness , James F. Bosch , Pim Schellart , Kian-Ta Lim , Andrei Salnikov , Michelle Gower

LAMDA-SSL is open-sourced on GitHub and its detailed usage documentation is available at https://ygzwqzd.github.io/LAMDA-SSL/. This documentation introduces LAMDA-SSL in detail from various aspects and can be divided into four parts. The…

机器学习 · 计算机科学 2023-08-16 Lin-Han Jia , Lan-Zhe Guo , Zhi Zhou , Yu-Feng Li

A recently introduced text classifier, called SS3, has obtained state-of-the-art performance on the CLEF's eRisk tasks. SS3 was created to deal with risk detection over text streams and, therefore, not only supports incremental training and…

机器学习 · 计算机科学 2020-07-21 Sergio G. Burdisso , Marcelo Errecalde , Manuel Montes-y-Gómez

Libpsht (or "library for Performant Spherical Harmonic Transforms") is a collection of algorithms for efficient conversion between spatial-domain and spectral-domain representations of data defined on the sphere. The package supports…

天体物理仪器与方法 · 物理学 2011-01-11 Martin Reinecke