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Cilia and flagella are actively bending slender organelles, performing functions such as motility, feeding and embryonic symmetry breaking. We review the mechanics of viscous-dominated microscale flow, including time-reversal symmetry, drag…

定量方法 · 定量生物学 2013-09-06 Thomas D. Montenegro-Johnson , Andrew A. Smith , David J. Smith , Daniel Loghin , John R. Blake

Many morphogenetic processes involve mechanical rearrangement of epithelial tissues that is driven by precisely regulated cytoskeletal forces and cell adhesion. The mechanical state of the cell and intercellular adhesion are not only the…

细胞行为 · 定量生物学 2015-06-03 Kevin K. Chiou , Lars Hufnagel , Boris I. Shraiman

We analyze the nonlinear waves that propagate on a microtubule that is tethered at its minus end due to kinesin walking on it, as is seen during the fluid mixing caused by cytoplasmic streaming in Drosophila oocytes.The model we use assumes…

生物大分子 · 定量生物学 2012-07-11 J. M. Deutsch , M. E. Brunner , William M. Saxton

Peristalsis enables transport of the food bolus in the gut. Here, I show by dynamic ex-vivo intra-cellular calcium imaging on living embryonic gut transverse sections that the most primitive form of peristalsis that occurs in the embryo is…

生物物理 · 物理学 2019-11-22 Nicolas Chevalier

This paper deals with the numerical modeling of wave propagation in porous media described by Biot's theory. The viscous efforts between the fluid and the elastic skeleton are assumed to be a linear function of the relative velocity, which…

流体动力学 · 物理学 2015-05-20 Guillaume Chiavassa , Bruno Lombard

In the Drosophila melanogaster egg chamber, the collective migration of border cells toward the oocyte is guided by spatial gradients of chemoattractants. While cellular responses to these cues are well characterized, the spatial…

偏微分方程分析 · 数学 2026-04-03 Naghmeh Akhavan , Alexander George , Michelle Starz-Gaiano , Bradford E. Peercy

Magnetically driven microparticles provide a versatile platform for probing and manipulating biological systems, yet the physical framework governing their actuation in complex environments remains only partially explored. Within the field…

软凝聚态物质 · 物理学 2025-10-15 Andrea Visonà , Robert Morel , Hélène Joisten , Bernard Dieny , Alice Nicolas

We study wave propagation in networks of coupled cells which can behave as excitable or self-oscillatory media. For excitable media, an asymptotic construction of wave trains is presented. This construction predicts their shape and speed,…

其他凝聚态物理 · 物理学 2009-11-11 A. Carpio

Undoped and strongly photoexcited semiconductor superlattices with field-dependent recombination behave as excitable or oscillatory media with spatially discrete nonlinear convection and diffusion. Infinitely long, dc-current-biased…

介观与纳米尺度物理 · 物理学 2015-05-30 J. I. Arana , L. L. Bonilla , H. T. Grahn

Single and collective cellular oscillations involving the actomyosin cytoskeleton have been observed in numerous biological systems. We show here that a generic model of a contractile material, which is turning over and contracts against an…

生物物理 · 物理学 2014-02-24 Kai Dierkes , Angughali Sumi , Jérôme Solon , Guillaume Salbreux

Driven granular media constitute model systems in out-of-equilibrium statistical physics. By assimilating the motions of granular particles to those of atoms, by analogy, one can obtain macroscopic equivalent of phase transitions. Here, we…

软凝聚态物质 · 物理学 2022-06-29 Michael Berhanu , Simon Merminod , Gustavo Castillo , Eric Falcon

In embryogenesis, epithelial cells, acting as individual entities or as coordinated aggregates in a tissue, exhibit strong coupling between chemical signalling and mechanical responses to internally or externally applied stresses.…

组织与器官 · 定量生物学 2023-06-27 Katerina Kaouri , Paul E. Méndez , Ricardo Ruiz-Baier

Hydrodynamic and magnetohydrodynamic numerical studies of a mechanically forced two-vortex flow inside a sphere are reported. The simulations are performed in the intermediate regime between the laminar flow and developed turbulence where a…

流体动力学 · 物理学 2015-05-14 K. Reuter , F. Jenko , A. Tilgner , C. B. Forest

We consider a free boundary model of epithelial cell migration with logistic growth and nonlinear diffusion induced by mechanical interactions. Using numerical simulations, phase plane and perturbation analysis, we find and analyse…

斑图形成与孤子 · 物理学 2020-10-05 Ryan J Murphy , Pascal R Buenzli , Ruth E Baker , Matthew J Simpson

During embryonic development tissue morphogenesis and signaling are tightly coupled. It is therefore important to simulate both tissue morphogenesis and signaling simultaneously in in silico models of developmental processes. The resolution…

组织与器官 · 定量生物学 2013-05-28 Dagmar Iber , Simon Tanaka , Patrick Fried , Philipp Germann , Denis Menshykau

We propose a 2D mechanical model of the ventral furrow formation in Drosophila that is based on undifferentiated epithelial cells of identical properties whose energy resides in their membrane. Depending on the relative tensions of the…

细胞行为 · 定量生物学 2011-08-25 A. Hocevar , P. Ziherl

Various challenges are faced when animalcules such as bacteria, protozoa, algae, or sperms move autonomously in aqueous media at low Reynolds number. These active agents are subject to strong stochastic fluctuations, that compete with the…

软凝聚态物质 · 物理学 2017-01-16 Christina Kurzthaler , Sebastian Leitmann , Thomas Franosch

Coordinated motion of cell monolayers during epithelial wound healing and tissue morphogenesis involves mechanical stress generation. Here we propose a model for the dynamics of epithelial expansion that couples mechanical deformations in…

软凝聚态物质 · 物理学 2015-06-09 Shiladitya Banerjee , Kazage J. C. Utuje , M. Cristina Marchetti

As wounds heal, embryos develop, cancer spreads, or asthma progresses, the cellular monolayer undergoes glass transition between solid-like jammed and fluid-like flowing states. During some of these processes, the cells undergo an…

While deformation twinning in hexagonal close-packed metals has been widely studied due to its substantial impact on mechanical properties, an understanding of the detailed atomic processes associated with twin embryo growth is still…