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Retrieval-Augmented Generation (RAG) enhances language models by combining retrieval with generation. However, its current workflow remains largely text-centric, limiting its applicability in geoscience. Many geoscientific tasks are…

新兴技术 · 计算机科学 2025-08-18 Runlong Yu , Shiyuan Luo , Rahul Ghosh , Lingyao Li , Yiqun Xie , Xiaowei Jia

Understanding mechanistic relationships among genes and their impacts on biological pathways is essential for elucidating disease mechanisms and advancing precision medicine. Despite the availability of extensive molecular interaction and…

分子网络 · 定量生物学 2026-03-24 Fujian Jia , Jiwen Gu , Cheng Lu , Dezhi Zhao , Mengjiang Huang , Yuanzhi Lu , Xin Liu , Kang Liu

Retrieval Augmented Generation (RAG) system is important in domains such as e-commerce, which has many long-tail entities and frequently updated information. Most existing works adopt separate modules for retrieval and generation, which may…

计算与语言 · 计算机科学 2024-10-01 Kaisi Guan , Qian Cao , Yuchong Sun , Xiting Wang , Ruihua Song

Large Language Models (LLMs) have shown remarkable performance on general Question Answering (QA), yet they often struggle in domain-specific scenarios where accurate and up-to-date information is required. Retrieval-Augmented Generation…

计算与语言 · 计算机科学 2026-02-13 Haoyue Bai , Haoyu Wang , Shengyu Chen , Zhengzhang Chen , Lu-An Tang , Wei Cheng , Haifeng Chen , Yanjie Fu

Retrieval-Augmented Generation (RAG) has gained prominence as an effective method for enhancing the generative capabilities of Large Language Models (LLMs) through the incorporation of external knowledge. However, the evaluation of RAG…

计算与语言 · 计算机科学 2025-04-25 Chanhee Park , Hyeonseok Moon , Chanjun Park , Heuiseok Lim

Large language models (LLMs) are transforming the way information is retrieved with vast amounts of knowledge being summarized and presented via natural language conversations. Yet, LLMs are prone to highlight the most frequently seen…

计算与语言 · 计算机科学 2024-02-20 Julien Delile , Srayanta Mukherjee , Anton Van Pamel , Leonid Zhukov

The rapid development of generative models for single-cell gene expression data has created an urgent need for standardised evaluation frameworks. Current evaluation practices suffer from inconsistent metric implementations, incomparable…

基因组学 · 定量生物学 2026-03-13 Andrea Rubbi , Andrea Giuseppe Di Francesco , Mohammad Lotfollahi , Pietro Liò

Motivation: Gene regulatory interactions are of fundamental importance to various biological functions and processes. However, only a few previous computational studies have claimed success in revealing genome-wide regulatory landscapes…

分子网络 · 定量生物学 2017-02-09 Shupeng Gui , Rui Chen , Liang Wu , Ji Liu , Hongyu Miao

In this paper, we introduce Latent Go-Explore (LGE), a simple and general approach based on the Go-Explore paradigm for exploration in reinforcement learning (RL). Go-Explore was initially introduced with a strong domain knowledge…

机器学习 · 计算机科学 2023-04-28 Quentin Gallouédec , Emmanuel Dellandréa

Retrieval-Augmented Generation (RAG) has shown significant improvements in various natural language processing tasks by integrating the strengths of large language models (LLMs) and external knowledge databases. However, RAG introduces long…

分布式、并行与集群计算 · 计算机科学 2024-04-26 Chao Jin , Zili Zhang , Xuanlin Jiang , Fangyue Liu , Xin Liu , Xuanzhe Liu , Xin Jin

Retrieval-augmented generation (RAG) improves the response quality of large language models (LLMs) by retrieving knowledge from external databases. Typical RAG approaches split the text database into chunks, organizing them in a flat…

计算与语言 · 计算机科学 2025-11-18 Boyu Chen , Zirui Guo , Zidan Yang , Yuluo Chen , Junze Chen , Zhenghao Liu , Chuan Shi , Cheng Yang

Retrieval augmented generation (RAG) combines the generative abilities of large language models (LLMs) with external knowledge sources to provide more accurate and up-to-date responses. Recent RAG advancements focus on improving retrieval…

Federated Retrieval-Augmented Generation (Federated RAG) combines Federated Learning (FL), which enables distributed model training without exposing raw data, with Retrieval-Augmented Generation (RAG), which improves the factual accuracy of…

计算与语言 · 计算机科学 2025-09-03 Abhijit Chakraborty , Chahana Dahal , Vivek Gupta

Background: Elucidating gene regulatory networks is crucial for understanding normal cell physiology and complex pathologic phenotypes. Existing computational methods for the genome-wide ``reverse engineering'' of such networks have been…

Large Language Models (LLMs) excel at many reasoning tasks but struggle with knowledge-intensive queries due to their inability to dynamically access up-to-date or domain-specific information. Retrieval-Augmented Generation (RAG) has…

计算与语言 · 计算机科学 2026-03-03 Minghao Guo , Qingcheng Zeng , Xujiang Zhao , Yanchi Liu , Wenchao Yu , Mengnan Du , Haifeng Chen , Wei Cheng

Retrieval-Augmented Generation (RAG) enhances the reasoning ability of Large Language Models (LLMs) by dynamically integrating external knowledge, thereby mitigating hallucinations and strengthening contextual grounding for structured data…

人工智能 · 计算机科学 2026-02-24 Sen Zhao , Lincheng Zhou , Yue Chen , Ding Zou

Large language models (LLMs) have made significant progress in general-purpose natural language processing tasks. However, LLMs are still facing challenges when applied to domain-specific areas like telecommunications, which demands…

计算与语言 · 计算机科学 2025-05-22 Dun Yuan , Hao Zhou , Di Wu , Xue Liu , Hao Chen , Yan Xin , Jianzhong , Zhang

Retrieval-augmented generation (RAG) enhances large language models (LLMs) with external knowledge but still suffers from long contexts and disjoint retrieval-generation optimization. In this work, we propose CLaRa (Continuous Latent…

计算与语言 · 计算机科学 2026-02-09 Jie He , Richard He Bai , Sinead Williamson , Jeff Z. Pan , Navdeep Jaitly , Yizhe Zhang

Retrieval-augmented generation (RAG) has emerged as a pivotal method for expanding the knowledge of large language models. To handle complex queries more effectively, researchers developed Adaptive-RAG (A-RAG) to enhance the generated…

人工智能 · 计算机科学 2025-05-27 Jie Ou , Jinyu Guo , Shuaihong Jiang , Zhaokun Wang , Libo Qin , Shunyu Yao , Wenhong Tian

Generative Adversarial Networks (GANs) have seen steep ascension to the peak of ML research zeitgeist in recent years. Mostly catalyzed by its success in the domain of image generation, the technique has seen wide range of adoption in a…

机器学习 · 统计学 2018-05-09 Aparna Balagopalan , Satya Gorti , Mathieu Ravaut , Raeid Saqur