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Spheroids are aggregates of cells that can mimic the cellular organization often found in tissues. They are typically formed through the self-assembly of cells in a culture where there is a promotion of interactions and cell-to-cell…

信号处理 · 电气工程与系统科学 2024-05-24 Ibrahim Isik , Mitra Rezaei , Adam Noel

Bacterial swarming is a rapid mass-migration, in which thousands of cells spread collectively to colonize a surface. Physically, swarming is a natural example of active particles that use energy to generate motion. Accordingly,…

We explore the critical behaviors in the dynamics of information transfer of a biologically-inspired system by an individual-based model. "Quorum response", a type of social interaction which has been recognized taxonomically in animal…

物理与社会 · 物理学 2013-08-22 Collin Feng Hu

We present a proof-of-concept of a model comparison approach for analyzing spatio-temporal observations of interacting populations. Our model variants are a collection of structurally similar Bayesian networks. Their distinct Noisy-Or…

统计方法学 · 统计学 2024-10-08 Nat Kendal-Freedman , Joseph Victor Fiorillo Meleshko , Aaron Yip , Brian Ingalls

Biological systems can share and collectively process information to yield emergent effects, despite inherent noise in communication. While man-made systems often employ intricate structural solutions to overcome noise, the structure of…

多智能体系统 · 计算机科学 2017-12-25 Lucas Boczkowski , Ofer Feinerman , Amos Korman , Emanuele Natale

Bacteria commonly inhabit porous environments such as host tissues, soil, and marine sediments, where complex geometries constrain and redirect their motion. Although bacterial motility has been studied in porous media, the roles of cell…

软凝聚态物质 · 物理学 2025-12-22 David Gao , Zeyuan Wang , Mihika Jain , Arnold J. T. M. Mathijssen , Ran Tao

Spread of information in crowd is analysed in terms of directed percolation in two-dimensional spatial network. We investigate the case when the information transmitted can be incomplete or damaged. The results indicate that for small or…

物理与社会 · 物理学 2011-04-26 Krzysztof Malarz , Vikas Chandra , Eve Mitleton-Kelly , Krzysztof Kulakowski

In this paper, diffusion-based molecular commu- nication with ligand receptor receivers is studied. Information messages are assumed to be encoded via variations of the con- centration of molecules. The randomness in the ligand reception…

信息论 · 计算机科学 2015-11-10 Mehrdad Tahmasbi , Faramarz Fekri

Classical percolation theory underlies many processes of information transfer along the links of a network. In these standard situations, the requirement for two nodes to be able to communicate is the presence of at least one uninterrupted…

统计力学 · 物理学 2023-10-25 Lorenzo Cirigliano , Claudio Castellano , Gábor Timár

In this paper we show that living cells can multiplex biochemical signals, i.e. transmit multiple signals through the same signaling pathway simultaneously, and yet respond to them very specifically. We demonstrate how two binary input…

分子网络 · 定量生物学 2012-06-01 Wiet de Ronde , Filipe Tostevin , Pieter Rein ten Wolde

In this paper, we propose a novel design for molecular communication in which both the transmitter and the receiver have, in a 3-dimensional environment, multiple bulges (in RF communication this corresponds to antenna). The proposed system…

新兴技术 · 计算机科学 2016-11-17 Bonhong Koo , H. Birkan Yilmaz , Andrew Eckford , Chan-Byoung Chae

We propose a general parametrizable model to capture the dynamic interaction among bacteria in the formation of micro-colonies. micro-colonies represent the first social step towards the formation of structured multicellular communities…

种群与进化 · 定量生物学 2014-10-30 Luca Canzian , Kun Zhao , Gerard C. L. Wong , Mihaela van der Schaar

Bacteria can form a great variety of spatially heterogeneous cell density patterns, ranging from simple concentric rings to dynamical spiral waves appearing in growing colonies. These pattern formation phenomena are important as they…

种群与进化 · 定量生物学 2025-01-17 John S. Chuang , Riccardo Rao , Stanislas Leibler

Molecular communication (MC) studies biological signals that are found in nature. Most MC literature focuses on particle properties, even though many natural phenomena exhibit wave-like behavior. One such signal is sound waves.…

信号处理 · 电气工程与系统科学 2025-12-02 Fatih Merdan , Ozgur B. Akan

In the growth of bacterial colonies, a great variety of complex patterns are observed in experiments, depending on external conditions and the bacterial species. Typically, existing models employ systems of reaction-diffusion equations or…

生物物理 · 物理学 2019-11-12 Lautaro Vassallo , David Hansmann , Lidia A. Braunstein

In biological cells and novel diagnostic devices biochemical receptors need to be sensitive to extremely small concentration changes of signaling molecules. The accuracy of such molecular signaling is ultimately limited by the counting…

亚细胞过程 · 定量生物学 2023-04-06 Aljaz Godec , Ralf Metzler

Molecular communication (MC) enables information transfer using particles inspired by biological systems. Volatile Organic Compounds (VOCs) are one of the most abundant and diverse classes of signaling molecules used by living or non-living…

信号处理 · 电气工程与系统科学 2026-04-10 Bitop Maitra , Ozgur B. Akan

The mechanism of bacterial cell size control has been a mystery for decades, which involves the well-coordinated growth and division in the cell cycle. The revolutionary modern techniques of microfluidics and the advanced live imaging…

统计力学 · 物理学 2021-08-30 Liang Luo , Yang Bai , Xiongfei Fu

Bacteria are the unseen majority on our planet, with millions of species and comprising most of the living protoplasm. While current methods enable in-depth study of a small number of communities, a simple tool for breadth studies of…

基因组学 · 定量生物学 2010-07-21 Amnon Amir , Or Zuk

Molecular communication (MC) allows nanomachines to communicate and cooperate with each other in a fluid environment. The diffusion-based MC is popular but is easily constrained by the transmit distance due to the severe attenuation of…

信息论 · 计算机科学 2021-04-28 Shuo Yuan , Jiaxing Wang , Mugen Peng
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