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In this paper, we investigate the effect of noise and disorder on the efficiency of excitation energy transfer (EET) in a $N=5$ sites linear chain with "static" dipole-dipole couplings. In fact, here, the disordered chain is a toy model for…

无序系统与神经网络 · 物理学 2014-12-25 Hassan Bassereh , Vahid Salari , Farhad Shahbazi

Understanding noisy information engines is a fundamental problem of non-equilibrium physics, particularly in biomolecular systems agitated by thermal and active fluctuations in the cell. By the generalized second law of thermodynamics, the…

统计力学 · 物理学 2020-09-01 Govind Paneru , Sandipan Dutta , Takahiro Sagawa , Tsvi Tlusty , Hyuk Kyu Pak

Noise usually has an unwelcome influence on system performance. For instance, noise inevitably affects the low-frequency mechanical freedom in optomechanical experiments. However, we investigate here the beneficial effects of thermal noise…

量子物理 · 物理学 2018-12-26 Danying Yu , Min Xie , Yanbei Cheng , Bixuan Fan

Bacterial chemotaxis is controlled by the signalling of a cluster of receptors. A cooperative model is presented, in which coupling between neighbouring receptor dimers enhances the sensitivity with which stimuli can be detected, without…

生物物理 · 物理学 2009-10-31 Yu Shi , Thomas Duke

Experiments suggest that cerebral cortex gains several functional advantages by operating in a dynamical regime near the critical point of a phase transition. However, a long-standing criticism of this hypothesis is that critical dynamics…

神经元与认知 · 定量生物学 2020-09-30 Kathleen Finlinson , Woodrow L. Shew , Daniel B. Larremore , Juan G. Restrepo

Most sensory cells use surface receptors to detect environmental stimuli and initiate downstream signaling. Cooperative interactions among sensory receptors is known to play a crucial role in enhancing the sensitivity of biochemical…

分子网络 · 定量生物学 2014-01-15 Jianmin Sun , Michael Grabe

Cilia and flagella exhibit regular bending waves that perform mechanical work on the surrounding fluid, to propel cellular swimmers and pump fluids inside organisms. Here, we quantify a force-velocity relationship of the beating flagellum,…

细胞行为 · 定量生物学 2016-12-21 Gary S. Klindt , Christian Ruloff , Christian Wanger , Benjamin M. Friedrich

Bacterial chemotaxis is one of the most extensively studied adaptive responses in cells. Many bacteria are able to bias their apparently random motion to produce a drift in the direction of the increasing chemoattractant concentration. It…

软凝聚态物质 · 物理学 2018-02-07 E. V. Pankratova , A. I. Kalyakulina , M. I. Krivonosov , S. Denisov , K. M. Taute , V. Yu. Zaburdaev

We consider quantum state transfer in a fully connected spin network, in which the results indicate that it is impossible to achieve high fidelity by free dynamics. However, the addition of certain kinds of noise can be helpful for this…

量子物理 · 物理学 2015-06-16 Morteza Rafiee , Cosmo Lupo , Stefano Mancini

We consider a model of active Brownian agents interacting via a harmonic attractive potential in a two-dimensional system in the presence of noise. By numerical simulations, we show that this model possesses a noise-induced transition…

生物物理 · 物理学 2007-05-23 Udo Erdmann , Werner Ebeling , Alexander S. Mikhailov

Animal cells can sense chemical gradients without moving, and are faced with the challenge of migrating towards a target despite noisy information on the target position. Here we discuss optimal search strategies for a chaser that moves by…

生物物理 · 物理学 2015-03-18 Pawel Romanczuk , Guillaume Salbreux

Most of our understanding of bacterial chemotaxis comes from studies of Escherichia coli. However, recent evidence suggests significant departures from the E. coli paradigm in other bacterial species. This variation may stem from different…

细胞行为 · 定量生物学 2015-03-27 Martin Godány , Bhavin S. Khatri , Richard A. Goldstein

The interplay between nonlinear dynamic systems and noise has proved to be of great relevance in several application areas. In this presentation, we focus on the areas of information transmission and storage. We review some recent results…

其他凝聚态物理 · 物理学 2017-11-22 P. I. Fierens , G. A. Patterson , A. A. García , D. F. Grosz

Gene expression is a noisy process that leads to regime shift between alternative steady states among individual living cells, inducing phenotypic variability. The effects of white noise on the regime shift in bistable systems have been…

分子网络 · 定量生物学 2017-08-23 Yogita Sharma , Partha Sharathi Dutta

It is hypothesized that nonlinear solid friction between the gel matrix and DNA molecules inhibits the motion of DNA through the nanopores of the gel during electrophoresis. In this article, it is demonstrated that external noise can…

介观与纳米尺度物理 · 物理学 2022-08-26 Aniruddha Deb , Prerona Gogoi , Sunil K. Singh , Partho Sarathi Gooh Pattader

The presence of correlated noise, arising from a mixture of independent fluctuations and a common noisy input shared across the neural population, is a ubiquitous feature of neural circuits, yet its impact on collective network dynamics…

神经元与认知 · 定量生物学 2026-01-16 Hui Wang , Chunming Zheng

Noise appears in the brain due to various sources, such as ionic channel fluctuations and synaptic events. They affect the activities of the brain and influence neuron action potentials. Stochastic differential equations have been used to…

A ubiquitous building block of signaling pathways is a cycle of covalent modification (e.g., phosphorylation and dephosphorylation in MAPK cascades). Our paper explores the kind of information processing and filtering that can be…

分子网络 · 定量生物学 2015-05-13 Carlos Gomez-Uribe , George C. Verghese , Leonid A. Mirny

We consider the influence of local noise on a generalized network of populations having positive and negative feedbacks. The population dynamics at the nodes is nonlinear, typically chaotic, and allows cessation of activity if the…

混沌动力学 · 物理学 2014-12-03 Anshul Choudhary , Vivek Kohar , Sudeshna sinha

Stochastic resonance is a phenomenon in which noise enhances the response of a system to an input signal. The brain is an example of a system that has to detect and transmit signals in a noisy environment, suggesting that it is a good…

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