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Understanding gene regulation is a fundamental step towards understanding of how cells function and respond to environmental cues and perturbations. An important step in this direction is to infer the transcription factor-gene regulatory…

分子网络 · 定量生物学 2017-04-25 Yijie Wang , Dong-Yeon Cho , Hangnoh Lee , Justin Fear , Brian Oliver , Teresa M Przytycka

Graph processes exhibit a temporal structure determined by the sequence index and and a spatial structure determined by the graph support. To learn from graph processes, an information processing architecture must then be able to exploit…

信号处理 · 电气工程与系统科学 2020-12-02 Luana Ruiz , Fernando Gama , Alejandro Ribeiro

Software systems are getting more and more complex. Model-driven engineering (MDE) offers ways to handle such increased complexity by lifting development to a higher level of abstraction. A key part in MDE are transformations that transform…

软件工程 · 计算机科学 2013-12-04 Georg Hinkel , Thomas Goldschmidt , Lucia Happe

Evolving networks with a constant number of edges may be modelled using a rewiring process. These models are used to describe many real-world processes including the evolution of cultural artifacts such as family names, the evolution of…

统计力学 · 物理学 2007-05-23 T. S. Evans

Compiler optimizations, usually expressed as rewrites on program graphs, are a core part of all modern compilers. However, even production compilers have bugs, and these bugs are difficult to detect and resolve. The problem only becomes…

编程语言 · 计算机科学 2014-07-31 William Mansky , Dennis Griffith , Elsa L. Gunter

One of the principal goals of graph modeling is to capture the building blocks of network data in order to study various physical and natural phenomena. Recent work at the intersection of formal language theory and graph theory has explored…

社会与信息网络 · 计算机科学 2023-01-30 Satyaki Sikdar , Justus Hibshman , Tim Weninger

We study the problem of graph structure identification, i.e., of recovering the graph of dependencies among time series. We model these time series data as components of the state of linear stochastic networked dynamical systems. We assume…

机器学习 · 计算机科学 2023-06-29 Sérgio Machado , Anirudh Sridhar , Paulo Gil , Jorge Henriques , José M. F. Moura , Augusto Santos

Classical graph algorithms work well for combinatorial problems that can be thoroughly formalized and abstracted. Once the algorithm is derived, it generalizes to instances of any size. However, developing an algorithm that handles complex…

机器学习 · 计算机科学 2022-12-12 Florian Grötschla , Joël Mathys , Roger Wattenhofer

In this work, we present the Grounded Recurrent Neural Network (GRNN), a recurrent neural network architecture for multi-label prediction which explicitly ties labels to specific dimensions of the recurrent hidden state (we call this…

机器学习 · 统计学 2017-05-25 Ankit Vani , Yacine Jernite , David Sontag

Legal case retrieval is an information retrieval task in the legal domain, which aims to retrieve relevant cases with a given query case. Recent research of legal case retrieval mainly relies on traditional bag-of-words models and language…

信息检索 · 计算机科学 2023-12-20 Yanran Tang , Ruihong Qiu , Yilun Liu , Xue Li , Zi Huang

Network modeling is a critical component for building self-driving Software-Defined Networks, particularly to find optimal routing schemes that meet the goals set by administrators. However, existing modeling techniques do not meet the…

网络与互联网体系结构 · 计算机科学 2021-06-15 Krzysztof Rusek , José Suárez-Varela , Albert Mestres , Pere Barlet-Ros , Albert Cabellos-Aparicio

Hypergraphs, with their capacity to depict high-order relationships, have emerged as a significant extension of traditional graphs. Although Graph Neural Networks (GNNs) have remarkable performance in graph representation learning, their…

机器学习 · 计算机科学 2024-11-07 Khaled Mohammed Saifuddin , Mehmet Emin Aktas , Esra Akbas

Graph Neural Networks (GNNs) have boosted the performance of many graph related tasks such as node classification and graph classification. Recent researches show that graph neural networks are vulnerable to adversarial attacks, which…

机器学习 · 计算机科学 2019-10-01 Yao Ma , Suhang Wang , Tyler Derr , Lingfei Wu , Jiliang Tang

Network performance modeling presents important challenges in modern computer networks due to increasing complexity, scale, and diverse traffic patterns. While traditional approaches like queuing theory and packet-level simulation have…

网络与互联网体系结构 · 计算机科学 2024-12-10 Shourya Verma , Simran Kadadi , Swathi Jayaprakash , Arpan Kumar Mahapatra , Ishaan Jain

Graph machine learning models have been successfully deployed in a variety of application areas. One of the most prominent types of models - Graph Neural Networks (GNNs) - provides an elegant way of extracting expressive node-level…

机器学习 · 计算机科学 2023-04-21 Jakub Binkowski , Albert Sawczyn , Denis Janiak , Piotr Bielak , Tomasz Kajdanowicz

Integrating data from heterogeneous sources is often modeled as merging graphs. Given two or more 'compatible', but not-isomorphic graphs, the first step is to identify a graph alignment, where a potentially partial mapping of vertices…

社会与信息网络 · 计算机科学 2018-03-13 Abdurrahman Yaşar , Ümit V. Çatalyürek

Networks are a powerful tool to model complex systems, and the definition of many Graph Neural Networks (GNN), Deep Learning algorithms that can handle networks, has opened a new way to approach many real-world problems that would be hardly…

机器学习 · 计算机科学 2021-09-28 Marco Grassia , Manlio De Domenico , Giuseppe Mangioni

This work addresses the challenge of using a deep learning model to prune graphs and the ability of this method to integrate explainability into spatio-temporal problems through a new approach. Instead of applying explainability to the…

机器学习 · 计算机科学 2025-10-14 Javier García-Sigüenza , Mirco Nanni , Faraón Llorens-Largo , José F. Vicent

By representing each collider event as a point cloud, we adopt the Graphic Convolutional Network (GCN) with focal loss to reconstruct the Higgs jet in it. This method provides higher Higgs tagging efficiency and better reconstruction…

高能物理 - 唯象学 · 物理学 2021-07-07 Jun Guo , Jinmian Li , Tianjun Li , Rao Zhang

Modern spreadsheet systems can be used to implement complex spreadsheet applications including data sheets, customized user forms and executable procedures written in a scripting language. These applications are often developed by…