相关论文: Outlier Detection for DNA Fragment Assembly

Many problems in bioinformatics are about finding strings that approximately represent a collection of given strings. We look at more general problems where some input strings can be classified as outliers. The Close to Most Strings problem…

Outlier detection is a well-researched and crucial problem in machine learning. However, there is little research on string data outlier detection, as most literature focuses on outlier detection of numerical data. A robust string data…

Often the challenge associated with tasks like fraud and spam detection[1] is the lack of all likely patterns needed to train suitable supervised learning models. In order to overcome this limitation, such tasks are attempted as outlier or…

The subspace approximation problem with outliers, for given $n$ points in $d$ dimensions $x_{1},\ldots, x_{n} \in R^{d}$, an integer $1 \leq k \leq d$, and an outlier parameter $0 \leq \alpha \leq 1$, is to find a $k$-dimensional linear…

In a corpus of data, outliers are either errors: mistakes in the data that are counterproductive, or are unique: informative samples that improve model robustness. Identifying outliers can lead to better datasets by (1) removing noise in…

Being robust to the presence of outliers is crucial for applying clustering algorithms in practice. In the $\textit{robust $k$-Means}$ problem (i.e., $k$-Means with outliers), the goal is to remove $z$ outliers and minimize the $k$-Means…

Outlier explanation is the task of identifying a set of features that distinguish a sample from normal data, which is important for downstream (human) decision-making. Existing methods are based on beam search in the space of feature…

Clustering with outliers is one of the most fundamental problems in Computer Science. Given a set $X$ of $n$ points and two integers $k$ and $m$, the clustering with outliers aims to exclude $m$ points from $X$ and partition the remaining…

Finding an Approximate Longest Common Substring (ALCS) within a given set $S=\{s_1,s_2,\ldots,s_m\}$ of $m \ge 2$ strings is a key problem in computational biology, such as identifying related mutations across multiple genetic sequences. We…

Multi-dimensional scaling (MDS) plays a central role in data-exploration, dimensionality reduction and visualization. State-of-the-art MDS algorithms are not robust to outliers, yielding significant errors in the embedding even when only a…

String consensus problems aim at finding a string that minimizes some given distance with respect to an input set of strings. In particular, in the Closest string problem, we are given a set of strings of equal length and a radius $d$. The…

Patterns that appear rarely or unusually in the data can be defined as outlier patterns. The basic idea behind detecting outlier patterns is comparison of their relative frequencies with frequent patterns. Their frequencies of appearance…

We study the classic $k$-means/median clustering, which are fundamental problems in unsupervised learning, in the setting where data are partitioned across multiple sites, and where we are allowed to discard a small portion of the data by…

The 1-center clustering with outliers problem asks about identifying a prototypical robust statistic that approximates the location of a cluster of points. Given some constant $0 < \alpha < 1$ and $n$ points such that $\alpha n$ of them are…

We revisit outlier hypothesis testing, propose exponentially consistent low complexity fixed-length and sequential tests and show that our tests achieve better tradeoff between detection performance and computational complexity than…

An elastic-degenerate string is a sequence of $n$ finite sets of strings of total length $N$, introduced to represent a set of related DNA sequences, also known as a pangenome. The ED string matching (EDSM) problem consists in reporting all…

We initiate the study of metric embeddings with \emph{outliers}. Given some metric space $(X,\rho)$ we wish to find a small set of outlier points $K \subset X$ and either an isometric or a low-distortion embedding of $(X\setminus K,\rho)$…

The $k$-means is a popular clustering objective, although it is inherently non-robust and sensitive to outliers. Its popular seeding or initialization called $k$-means++ uses $D^{2}$ sampling and comes with a provable $O(\log k)$…

Outlier detection is an important problem occurring in a wide range of areas. Outliers are the outcome of fraudulent behaviour, mechanical faults, human error, or simply natural deviations. Many data mining applications perform outlier…

Finding rare information hidden in a huge amount of data from the Internet is a necessary but complex issue. Many researchers have studied this issue and have found effective methods to detect anomaly data in low dimensional space. However,…