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To theoretically understand force generation properties of actin filaments, many models consider growing filaments pushing against a movable obstacle or barrier. In order to grow, the filaments need space and hence it is necessary to move…

生物物理 · 物理学 2019-02-19 Raj Kumar Sadhu , Sakuntala Chatterjee

To study the compressional forces exerted by a bundle of living stiff filaments pressing on a surface, akin to the case of an actin bundle in filopodia structures, we have performed particulate Molecular Dynamics simulations of a grafted…

软凝聚态物质 · 物理学 2015-06-17 Sanoop Ramachandran , Jean-Paul Ryckaert

We study the force generation by a set of parallel actin filaments growing against an elastic membrane. The elastic membrane tries to stay flat and any deformation from this flat state, either caused by thermal fluctuations or due to…

生物物理 · 物理学 2018-03-20 Raj Kumar Sadhu , Sakuntala Chatterjee

In various cellular processes, biofilaments like F-actin and F-tubulin are able to exploit chemical energy associated to polymerization to perform mechanical work against an external load. The force-velocity relationship quantitatively…

统计力学 · 物理学 2018-04-04 Alessia Perilli , Carlo Pierleoni , Giovanni Ciccotti , Jean-Paul Ryckaert

We establish the Statistical Mechanics framework for a bundle of Nf living and uncrosslinked actin filaments in a supercritical solution of free monomers pressing against a mobile wall. The filaments are anchored normally to a fixed planar…

生物物理 · 物理学 2016-07-27 Alessia Perilli , Carlo Pierleoni , Giovanni Ciccotti , Jean Paul Ryckaert

We investigate stall force and polymerization kinetics of rigid protofilaments in a microtubule or interacting filaments in bundles under an external load force in the framework of a discrete growth model. We introduce the concecpt of…

统计力学 · 物理学 2011-02-11 Jaroslaw Krawczyk , Jan Kierfeld

We study force generation by a set of parallel actin filaments growing against a non-rigid obstacle, in presence of an external load. The filaments polymerize by either moving the whole obstacle, with a large energy cost, or by causing…

亚细胞过程 · 定量生物学 2016-06-27 Raj Kumar Sadhu , Sakuntala Chatterjee

We investigate the growth of a branched actin network under load. Using a combination of simulations and theory, we show that the network adapts to the load and exhibits two regimes: a finite velocity at low stress, followed by a power-law…

软凝聚态物质 · 物理学 2025-01-10 Magid Badaoui , Serge Dmitrieff

In many organisms, cell division is driven by the constriction of a cytokinetic ring, which consists of actin filaments and crosslinking proteins. While it has long been believed that the constriction is driven by motor proteins, it has…

生物物理 · 物理学 2023-07-26 Alexander Cumberworth , Pieter Rein ten Wolde

Pattern formation and the mechanics of a mixture of actin filaments and myosin motors that is confined by a rigid membrane is investigated. By using a coarse-grained molecular dynamics model, we demonstrate that the competition between the…

软凝聚态物质 · 物理学 2023-04-12 Mitsusuke Tarama , Tatsuo Shibata

Cells moving on a two dimensional substrate generate motion by polymerizing actin filament networks inside a flat membrane protrusion. New filaments are generated by branching off existing ones, giving rise to branched network structures.…

生物物理 · 物理学 2015-06-29 Mohammadhosein Razbin , Martin Falcke , Panayotis Benetatos , Annette Zippelius

The polymerization dynamics of double-stranded polymers, such as actin filaments, is investigated theoretically using simple chemical kinetic models that explicitly take into account some microscopic details of the polymer structure and the…

软凝聚态物质 · 物理学 2009-11-10 Evgeny B. Stukalin , Anatoly B. Kolomeisky

We present a statistical mechanical study of stiff polymers, motivated by experiments on actin filaments and the considerable current interest in polymer networks. We obtain simple, approximate analytical forms for the force-extension…

软凝聚态物质 · 物理学 2009-11-13 Abhijit Ghosh , Joseph Samuel , Supurna Sinha

We present a simple and generic theoretical description of actin-based motility, where polymerization of filaments maintains propulsion. The dynamics is driven by polymerization kinetics at the filaments' free ends, crosslinking of the…

细胞行为 · 定量生物学 2015-05-13 Azam Gholami , Martin Falcke , Erwin Frey

We consider a single living semi-flexible filament with persistence length l_p in chemical equilibrium with a solution of free monomers at fixed monomer chemical potential mu_1 and fixed temperature T. While one end of the filament is…

生物物理 · 物理学 2015-10-28 Carlo Pierleoni , Giovanni Ciccotti , Jean-Paul Ryckaert

Molecular motors and cytoskeletal filaments work collectively most of the time under opposing forces. This opposing force may be due to cargo carried by motors or resistance coming from the cell membrane pressing against the cytoskeletal…

软凝聚态物质 · 物理学 2017-02-22 Tripti Bameta , Dipjyoti Das , Dibyendu Das , Ranjith Padinhateeri , Mandar M. Inamdar

We use Brownian dynamics simulations and theory to study the over-damped spatiotemporal dynamics and pattern formation in a fluid-permeated array of equally spaced, active, elastic filaments that are pinned at one end and free at the other.…

软凝聚态物质 · 物理学 2024-12-31 Sonu Karayat , Prashant K. Purohit , L. Mahadevan , Arvind Gopinath , Raghunath Chelakkot

The process of force generation by the growth of biopolymers is simulated via a Langevin-dynamics approach. The interaction forces are taken to have simple forms that favor the growth of straight fibers from solution. The force-velocity…

生物物理 · 物理学 2009-11-06 A. E. Carlsson

Modeling approaches of suspended, rod-like particles and recent experimental data have shown that depletion forces display different signatures depending on the orientation of these particles. It has been shown that axial attraction of two…

The dynamic behavior of bundles of actin filaments growing against a loaded obstacle is investigated through a generalized version of the standard multi filaments Brownian Ratchet model in which the (de)polymerizing filaments are treated…

生物物理 · 物理学 2019-05-22 Alessia Perilli , Carlo Pierleoni , Jean-Paul Ryckaert
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