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We develop a novel method of replica-exchange molecular dynamics (REMD) simulation, mass-scaling REMD (MSREMD) method, which improves trajectory accuracy at high temperatures, and thereby contributes to numerical stability. In addition, the…

统计力学 · 物理学 2015-06-19 Tetsuro Nagai , Takuya Takahashi

This paper proposes a novel reaction-diffusion system approximation tailored for singular diffusion problems, typified by the fast diffusion equation. While such approximation methods have been successfully applied to degenerate parabolic…

偏微分方程分析 · 数学 2026-04-01 Hideki Murakawa , Florian Salin

Pore-scale simulations accurately describe transport properties of fluids in the subsurface. These simulations enhance our understanding of applications such as assessing hydrogen storage efficiency and forecasting CO$_2$ sequestration…

We treat the accurate simulation of the calcination reaction in particles, where the particles are large and, thus, the inner-particle processes must be resolved. Because these processes need to be described with coupled partial…

流体动力学 · 物理学 2023-11-28 Lucas Reineking , Torben Bergold , Enric Illana , Viktor Scherer , Martin Mönnigmann

The reaction-diffusion master equation (RDME) is a model that allows for efficient on-lattice simulation of spatially resolved stochastic chemical kinetics. Compared to off-lattice hard-sphere simulations with Brownian Dynamics (BD) or…

数值分析 · 数学 2017-09-06 Stefan Hellander , Andreas Hellander , Linda Petzold

Understanding grain-surface processes is crucial to interpreting the chemistry of the ISM. However, accurate surface chemistry models are computationally expensive and are difficult to integrate with gas-phase simulations. A new…

天体物理学 · 物理学 2009-11-13 R. T. Garrod

The development of computational models for the numerical simulation of chemically reacting flows operating in the turbulent regime requires the solution of partial differential equations that represent the balance of mass, linear momentum,…

流体动力学 · 物理学 2021-06-03 Americo Cunha , Luis Fernando Figueira da Silva

A combination of reaction-diffusion models with moving-boundary problems yields a system in which the diffusion (spreading and penetration) and reaction (transformation) evolve the system's state and geometry over time. These systems can be…

计算工程、金融与科学 · 计算机科学 2020-08-26 Mojtaba Barzegari , Liesbet Geris

In recent years, reduced basis methods (RBMs) have been adapted to the many-body eigenvalue problem and they have been used, largely in nuclear physics, as fast emulators able to bypass expensive direct computations while still providing…

超导电性 · 物理学 2023-04-19 Virgil V. Baran , Denis R. Nichita

We present a simple finite element formulation of mass-consistent approximation, and a fast multigrid iterative method with adaptive semicoarsening, which maintains the convergence of the iterations over a range of grids and penalty…

数值分析 · 数学 2022-01-19 J. Mandel , A. Farguell , A. K. Kochanski , D. V. Mallia , K. Hilburn

Reaction networks in the bulk and on surfaces are widespread in physical, chemical and biological systems. In macroscopic systems, which include large populations of reactive species, stochastic fluctuations are negligible and the reaction…

统计力学 · 物理学 2007-10-12 Baruch Barzel , Ofer Biham , Raz Kupferman

Diffusion behaviors of heterogeneous materials are of paramount importance in many engineering problems. Numerical models that take into account the internal structure of such materials are robust but computationally very expensive. This…

数值分析 · 数学 2023-12-18 Jan Eliáš , Hao Yin , Gianluca Cusatis

39 detailed mechanisms for combustion of hydrogen, carbon monoxide and methanol are investigated using ReactionKinetics, a Mathematica based package. The obtained results in most cases do not depend on the choice of reaction rate…

化学物理 · 物理学 2013-08-06 J. Tóth , A. L. Nagy , I. Zsély

This is the first part of a series of two articles describing the ARP-GEM global atmosphere model version 1 and its evaluation in simulations from 55 km to 6 km resolutions. This article provides a complete description of ARP-GEM1, focusing…

大气与海洋物理 · 物理学 2024-10-01 David Saint-Martin , Olivier Geoffroy

We present an acceleration method for sequences of large-scale linear systems, such as the ones arising from the numerical solution of time-dependent partial differential equations coupled with algebraic constraints. We discuss different…

数值分析 · 数学 2024-03-29 Margherita Guido , Daniel Kressner , Paolo Ricci

As inverter-based resources (IBRs) penetrate power systems, the dynamics become more complex, exhibiting multiple timescales, including electromagnetic transient (EMT) dynamics of power electronic controllers and electromechanical dynamics…

系统与控制 · 电气工程与系统科学 2025-03-17 Kaiyang Huang , Min Xiong , Yang Liu , Kai Sun

In this paper, we present a study on how to develop an efficient multiscale simulation strategy for the dynamics of chemically active systems on low-dimensional supports. Such reactions are encountered in a wide variety of situations,…

计算物理 · 物理学 2015-06-04 Giacomo Mazzi , Yannick De Decker , Giovanni Samaey

This paper presents a heterogeneous adaptive mesh refinement (AMR) framework for efficient simulation of moderately stiff reactive problems. This framework features an elaborate subcycling-in-time algorithm along with a specialized…

计算物理 · 物理学 2025-06-04 Yuqi Wang , Yadong Zeng , Ralf Deiterding , Jianhan Liang

The multi-grid reaction-diffusion master equation (mgRDME) provides a generalization of stochastic compartment-based reaction-diffusion modelling described by the standard reaction-diffusion master equation (RDME). By enabling different…

定量方法 · 定量生物学 2024-05-06 Radek Erban , Stefanie Winkelmann

In atomistic simulations, pseudo-dynamics relaxation schemes often exhibit better performance and accuracy in finding local minima than line-search-based descent algorithms like steepest descent or conjugate gradient. Here, an improved…