相关论文: Considering Adelman's Shortest Permutation Strings

We consider a new class of linear codes, called affine Grassmann codes. These can be viewed as a variant of generalized Reed-Muller codes and are closely related to Grassmann codes. We determine the length, dimension, and the minimum…

An absent word of a word y of length n is a word that does not occur in y. It is a minimal absent word if all its proper factors occur in y. Minimal absent words have been computed in genomes of organisms from all domains of life; their…

In his 1987 paper entitled "Generalized String Matching", Abrahamson introduced {\em pattern matching with character classes} and provided the first efficient algorithm to solve it. The best known solution to date is due to Linhart and…

We consider the following problem: from a given set of gene families trees on a set of genomes, find a first speciation, that splits these genomes into two subsets, that minimizes the number of gene duplications that happened before this…

In this paper we study a variant of string pattern matching which deals with tuples of strings known as \textit{multi-track strings}. Multi-track strings are a generalisation of strings (or \textit{single-track strings}) that have primarily…

We introduce a permutation analogue of the celebrated Szemeredi Regularity Lemma, and derive a number of consequences. This tool allows us to provide a structural description of permutations which avoid a specified pattern, a result that…

We introduce an algorithm that conjectures the structure of a permutation class in the form of a disjoint cover of "rules"; similar to generalized grid classes. The cover is usually easily verified by a human and translated into an…

Recursive list decoding is considered for Reed-Muller (RM) codes. The algorithm repeatedly relegates itself to the shorter RM codes by recalculating the posterior probabilities of their symbols. Intermediate decodings are only performed…

A wide range of applications, most notably in comparative genomics, involve the computation of a shortest sorting sequence of operations for a given permutation, where the set of allowed operations is fixed beforehand. Such sequences are…

A permutation is simsun if for all k, the subword of the one-line notation consisting of the k smallest entries does not have three consecutive decreasing elements. Simsun permutations were introduced by Simion and Sundaram, who showed that…

String diagrams are an increasingly popular algebraic language for the analysis of graphical models of computations across different research fields. Whereas string diagrams have been thoroughly studied as semantic structures, much less…

We describe a new algorithm which for each braid returns a quasi-geodesic sigma-definite word representative, defined as a braid word in which the generator sigma_i with maximal index i appears either only positively or only negatively.

In this letter, we develop an efficient linear programming (LP) decoding algorithm for low-density parity-check (LDPC) codes. We first relax the maximum likelihood (ML) decoding problem to a LP problem by using check-node decomposition.…

We obtain an upper and lower bound for the number of reduced words for a permutation in terms of the number of braid classes and the number of commutation classes of the permutation. We classify the permutations that achieve each of these…

This article presents a methodology that automatically derives a combinatorial specification for a permutation class C, given its basis B of excluded patterns and the set of simple permutations in C, when these sets are both finite. This is…

Let M(n, d) be the maximum size of a permutation array on n symbols with pairwise Hamming distance at least d. We use various combinatorial, algebraic, and computational methods to improve lower bounds for M(n, d). We compute the Hamming…

We consider the problem of determining the maximum number of moves required to sort a permutation of $[n]$ using cut-and-paste operations, in which a segment is cut out and then pasted into the remaining string, possibly reversed. We give…

Randomly generating structured objects is important in testing and optimizing functional programs, whereas generating random $'l$-terms is more specifically needed for testing and optimizing compilers. For that a tool called QuickCheck has…

Many algorithms have been developed for enumerating various combinatorial objects in time exponentially less than the number of objects. Two common classes of algorithms are dynamic programming and the transfer matrix method. This paper…

We demonstrate how a genetic algorithm solves the problem of minimizing the resources used for network coding, subject to a throughput constraint, in a multicast scenario. A genetic algorithm avoids the computational complexity that makes…