相关论文: Script Handbook for Interactive Scientific Website…

Semi-structured content in HTML tables, lists, and infoboxes accounts for a substantial share of factual data on the web, yet the formatting complicates usage, and reliably extracting structured information from them remains challenging.…

MadDM is an automated numerical tool for the computation of dark-matter observables for generic new physics models. We announce version 3.1 and summarize its features. Notably, the code goes beyond the mere cross-section computation for…

SMISS is a novel web server for protein function prediction. Three different predictors can be selected for different usage. It integrates different sources to improve the protein function prediction accuracy, including the query protein…

We introduce a new software package, DarkMatters, which has been designed to facilitate the calculation of all aspects of indirect dark matter detection of WIMPs in astrophysical settings. Two primary features of this code are the…

The reproducibility issue in science has come under increased scrutiny. One consistent suggestion lies in the use of scripted methods or workflows for data analysis. Image analysis is one area in science in which little can be done in…

We develop a Python-based open-source package to analyze the results stemming from ab initio molecular-dynamics simulations of fluids. The package is best suited for applications on natural systems, like silicate and oxide melts,…

Fully automated astronomical data calibration and imaging pipelines are difficult to develop without a good prototyping method which permits to bridge the time between observatory commissioning and the moment when the special features and…

The Herschel Common Science System (HCSS) (Ott et al. 2006) (Ott & Science Ground Segment Consortium 2010) is a substantial Java software package, accompanying the development of the Herschel Mission (Pilbratt et al. 2010), supporting all…

The Asteroseismic Modeling Portal (AMP) provides a web-based interface for astronomers to run and view simulations that derive the properties of Sun-like stars from observations of their pulsation frequencies. In this paper, we describe the…

PLUMED-GUI is an interactive environment to develop and test complex PLUMED scripts within the Visual Molecular Dynamics (VMD) environment. Computational biophysicists can take advantage of both PLUMED's rich syntax to define collective…

In this article I present IEAD, a new interface for astronomical science databases. It is based on a powerful, yet simple, syntax designed to completely abstract the user from the structure of the underlying database. The programming…

Server-side request forgery (SSRF) vulnerabilities are inevitable in PHP web applications. Existing static tools in detecting vulnerabilities in PHP web applications neither contain SSRF-related features to enhance detection accuracy nor…

In this paper we introduce the AMADEUS strategy, which has been used to produce scientific writing tools for non-native users of English for 15 years, and emphasize a learn-by-doing approach through which students and novice writers can…

The AMIDER, Advanced Multidisciplinary Integrated-Database for Exploring new Research, is a newly developed research data catalog to demonstrate an advanced database application. AMIDER is characterized as a multidisciplinary database…

We present the open source Astrophysical Multi-purpose Software Environment (AMUSE, www.amusecode.org), a component library for performing astrophysical simulations involving different physical domains and scales. It couples existing codes…

astroquery is a collection of tools for requesting data from databases hosted on remote servers with interfaces exposed on the internet, including those with web pages but without formal application program interfaces (APIs). These tools…

The community's reliance on simplified descriptions of WIMP-nucleus interactions reflects the absence of analysis tools that integrate general theories of dark matter with standard treatments of nuclear response functions. To bridge this…

Electronic quizzes are used extensively for summative and formative assessment. Current Learning Management Systems (LMS) allow instructors to create quizzes through a Graphical User Interface. Despite having a smooth learning curve,…

Many scientific-software projects test their codes inadequately, or not at all. Despite its well-known benefits, adopting routine testing is often not easy. Development teams may have doubts about establishing effective test procedures,…

The first step in a science project is the acquisition and understanding of the relevant data. This paper outlines the results of a project to design and test network tools specifically oriented at retrieving astronomical data. The tools…