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In past work, we developed a computational model of the evolution of symbiotic entities (Model-S), based on Conway's Game of Life. In this article, we examine three trends that biologists have observed in the evolution of symbiotes. (1)…

神经与进化计算 · 计算机科学 2022-09-28 Peter D. Turney

Biological and social systems are structured at multiple scales, and the incentives of individuals who interact in a group may diverge from the collective incentive of the group as a whole. Mechanisms to resolve this tension are responsible…

种群与进化 · 定量生物学 2023-05-31 Daniel B. Cooney , Simon A. Levin , Yoichiro Mori , Joshua B. Plotkin

Demographic stochasticity is important in determining extinction risks of small populations, but it is largely unknown how its effect depends on the life histories of species. We modeled effects of demographic stochasticity on extinction…

种群与进化 · 定量生物学 2013-03-19 Tobias Jeppsson , Pär Forslund

Biological evolution of a population is governed by the fitness landscape, which is a map from genotype to fitness. However, a fitness landscape depends on the organisms environment, and evolution in changing environments is still poorly…

种群与进化 · 定量生物学 2022-09-26 Suman G Das , Joachim Krug , Muhittin Mungan

Mathematical modelling of epidemiological and coevolutionary dynamics is widely being used to improve disease management strategies of infectious diseases. Many diseases present some form of intra-host quiescent stage, also known as covert…

种群与进化 · 定量生物学 2022-05-26 Usman Sanusi , Sona John , Johannes Mueller , Aurélien Tellier

Cyclic dominance is frequently believed to be a mechanism that maintains diversity of competing species. But this delicate balance could also be fragile if some of the members is weakened because an extinction of a species will involve the…

种群与进化 · 定量生物学 2021-08-31 D. Bazeia , M. Bongestab , B. F. de Oliveira , A. Szolnoki

We present a model for host-parasite dynamics which incorporates both vertical and horizontal transmission as well as spatial structure. Our model consists of stacked contact processes (CP), where the dynamics of the host is a simple CP on…

生物物理 · 物理学 2015-05-26 Steven J. Court , Richard A. Blythe , Rosalind J. Allen

We study a version of the Tangled Nature model of evolutionary ecology redefined in a phenotype space where mutants have properties correlated to their parents. The model has individual-based dynamics whilst incorporating species scale…

种群与进化 · 定量生物学 2016-09-08 Simon Laird , Henrik Jeldtoft Jensen

We study an evolutionary spatial prisoner's dilemma game where the fitness of the players is determined by both the payoffs from the current interaction and their history. We consider the situation where the selection timescale is slower…

物理与社会 · 物理学 2009-09-15 Zhi-Xi Wu , Zhihai Rong , Petter Holme

Background. Organisms use a variety of mechanisms to protect themselves against perturbations. For example, repair mechanisms fix damage, feedback loops keep homeostatic systems at their setpoints, and biochemical filters distinguish signal…

种群与进化 · 定量生物学 2011-12-14 Steven A. Frank

Dynamic exploration for a predator-prey bio-system of two species with ratio-dependent functional response is carried out, where the capability to predate in both the stages of the predator, the juvenile and the matured, is taken into…

种群与进化 · 定量生物学 2022-12-27 Debasish Bhattacharjee , Tapasvini Roy , Santanu Acharjee , Tarini Kumar Dutta

An elementary biostatistical theory based on a selectivity-variability principle is proposed to address a question raised by Charles Darwin, namely, how one sex of a sexually dimorphic species might tend to evolve with greater variability…

种群与进化 · 定量生物学 2024-10-04 Theodore P. Hill

Modern biological tools have made it possible to unequivocally demonstrate the deep relationship among species in terms of genes and basic molecular mechanisms. In addition, results from genetic, physical and physiological approaches…

种群与进化 · 定量生物学 2019-03-11 Jacques H. Daniel

Same-sex sexual behavior is ubiquitous in the animal kingdom, but its adaptive origins remain a prominent puzzle. Here I suggest the possibility that same-sex sexual behavior arises as a consequence of the competition between an…

种群与进化 · 定量生物学 2016-09-16 Brian Skinner

We model a social-encounter network where linked nodes match for reproduction in a manner depending probabilistically on each node`s attractiveness. The developed model reveals that increasing either the network`s mean degree or the…

物理与社会 · 物理学 2017-06-22 S. Dipple , T. Jia , T. Caraco , G. Korniss , B. K. Szymanski

Population dynamics is constrained by the environment, which needs to obey certain conditions to support population growth. We consider a standard model for the evolution of a single species population density, that includes reproduction,…

种群与进化 · 定量生物学 2016-10-18 E. H. Colombo , C. Anteneodo

Mutation rate is a key determinant of the pace as well as outcome of evolution, and variability in this rate has been shown in different scenarios to play a key role in evolutionary adaptation and resistance evolution under stress caused by…

种群与进化 · 定量生物学 2019-03-01 Dalit Engelhardt , Eugene I. Shakhnovich

Plant-pollinator associations are often seen as purely mutualistic, while in reality they can be more complex. Indeed they may also display a diverse array of antagonistic interactions, such as competition and victim--exploiter…

种群与进化 · 定量生物学 2016-07-21 Tomás A. Revilla , Francisco Encinas-Viso

We introduce fidelity into the bit-string Penna model for biological ageing and study the advantage of this fidelity when it produces a higher survival probability of the offspring due to paternal care. We attribute a lower reproduction…

统计力学 · 物理学 2009-10-31 A. O. Sousa , S. Moss de Oliveira

The tendency of repeating past choices more often than expected from the history of outcomes has been repeatedly empirically observed in reinforcement learning experiments. It can be explained by at least two computational processes:…

神经与进化计算 · 计算机科学 2024-10-28 Isabelle Hoxha , Leo Sperber , Stefano Palminteri