相关论文: Data management in systems biology I - Overview an…
This special issue collects contributions from the participants of the "Information in Dynamical Systems and Complex Systems" workshop, which cover a wide range of important problems and new approaches that lie in the intersection of…
Containers, enabling lightweight environment and performance isolation, fast and flexible deployment, and fine-grained resource sharing, have gained popularity in better application management and deployment in addition to hardware…
Knowledge Organization Systems (e.g. taxonomies and ontologies) continue to contribute benefits in the design of information systems by providing a shared conceptual underpinning for developers, users, and automated systems. However, the…
Large language models (LLMs) have demonstrated remarkable performance across a wide range of tasks and domains, with data playing a central role in enabling these advances. Despite this success, the preparation and effective utilization of…
System engineering has been shifting from document-centric to model-based approaches, where assets are becoming more and more digital. Although digitisation conveys several benefits, it also brings several concerns (e.g., storage and…
Graph Theoretic Process Network Synthesis is described as an introduction to biological networks. Genetic, protein and metabolic systems are considered. The theoretical work of Kauffman is discussed and amplified by critical property…
Science advances not only through the accumulation of facts but also through the evolution of tools. Crucially, tools are rarely used in isolation. They form tool portfolios, combinations shaped by a discipline's workflows and analytical…
We live in a world driven by data. The amount of it outgrows anyone's ability to oversee it or even observe its scope. Along with all the advances in the space of data management, there is still a significant lack of formalism and…
Recent advances in large language models (LLMs) have enabled a new class of AI agents that automate multiple stages of the data science workflow by integrating planning, tool use, and multimodal reasoning across text, code, tables, and…
The quality of the data in a dataset can have a substantial impact on the performance of a machine learning model that is trained and/or evaluated using the dataset. Effective dataset management, including tasks such as data cleanup,…
Correctly applying distributed systems concepts is important for software that seeks to be scalable, reliable and fast. For this reason, Distributed Systems is a course included in many Computer Science programs. To both describe current…
The excessive amounts of data generated by devices and Internet-based sources at a regular basis constitute, big data. This data can be processed and analyzed to develop useful applications for specific domains. Several mathematical and…
In the real world, most objects and data have multiple types of attributes and inter-connections. Such data structures are named "Heterogeneous Information Networks" (HIN) and have been widely researched. Biological systems are also…
Twenty-five years ago the desktop computer started becoming ubiquitous in the scientific lab. Researchers were delighted with its ability to both control instrumentation and acquire data on a single system, but they were not completely…
Decentralised workflow management systems are a new research area, where most work to-date has focused on the system's overall architecture. As little attention has been given to the security aspects in such systems, we follow a security…
Today, the number of data-intensive and compute-intensive applications like business and scientific workflows has dramatically increased, which made cloud computing more popular in the matter of delivering a large amount of computing…
In this thesis first we propose an intermediate data management scheme for a SWfMS. In our second attempt, we explored the possibilities and introduced an automatic recommendation technique for a SWfMS from real-world workflow data (i.e…
Similar to managing software packages, managing the ontology life cycle involves multiple complex workflows such as preparing releases, continuous quality control checking, and dependency management. To manage these processes, a diverse set…
A common feature across many science and engineering applications is the amount and diversity of data and computation that must be integrated to yield insights. Data sets are growing larger and becoming distributed; and their location,…
One of the most significant problems of Big Data is to extract knowledge through the huge amount of data. The usefulness of the extracted information depends strongly on data quality. In addition to the importance, data quality has recently…