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We present an open-source tensor network Python library for quantum many-body simulations. At its core is an abelian-symmetric tensor, implemented as a sparse block structure managed by logical layer on top of dense multi-dimensional array…

强关联电子 · 物理学 2025-03-05 Marek M. Rams , Gabriela Wójtowicz , Aritra Sinha , Juraj Hasik

We have built an open-source software system for the modeling of biomolecular reaction networks, SloppyCell, which is written in Python and makes substantial use of third-party libraries for numerics, visualization, and parallel…

定量方法 · 定量生物学 2007-05-23 Christopher R. Myers , Ryan N. Gutenkunst , James. P. Sethna

Molecular dynamics simulations play an increasingly important role in the rational design of (nano)-materials and in the study of biomacromolecules. However, generating input files and realistic starting coordinates for these simulations is…

We present a novel approach for learning nonlinear dynamic models, which leads to a new set of tools capable of solving problems that are otherwise difficult. We provide theory showing this new approach is consistent for models with long…

人工智能 · 计算机科学 2009-06-03 John Langford , Ruslan Salakhutdinov , Tong Zhang

Dynamic programming (DP) is a fundamental and powerful algorithmic paradigm taught in most undergraduate (and many graduate) algorithms classes. DP problems are challenging for many computer science students because they require identifying…

计算机与社会 · 计算机科学 2024-11-13 David H. Lee , Aditya Prasad , Ramiro Deo-Campo Vuong , Tianyu Wang , Eric Han , David Kempe

One of the most applied learning in virtual spaces is using E-Learning systems. Some E-Learning methodologies has been introduced, but the main subject is the most positive feedback from E-Learning systems. In this paper, we introduce a new…

计算机与社会 · 计算机科学 2010-03-17 Amin Daneshmand Malayeri , Jalal Abdollahi

Recent advances in artificial intelligence have demonstrated the learnability of symbolic computation through end-to-end deep learning. Given a sufficient number of examples of symbolic expressions before and after the target computation,…

机器学习 · 计算机科学 2025-06-11 Hiroshi Kera , Shun Arakawa , Yuta Sato

The Python colorspace package provides a toolbox for mapping between different color spaces which can then be used to generate a wide range of perceptually-based color palettes for qualitative or quantitative (sequential or diverging)…

图形学 · 计算机科学 2025-10-07 Reto Stauffer , Achim Zeileis

We present Conedy, a performant scientific tool to numerically investigate dynamics on complex networks. Conedy allows to create networks and provides automatic code generation and compilation to ensure performant treatment of arbitrary…

计算物理 · 物理学 2015-06-04 Alexander Rothkegel , Klaus Lehnertz

With new advances in machine learning and in particular powerful learning libraries, we illustrate some of the new possibilities they enable in terms of nonlinear system identification. For a large class of hybrid systems, we explain how…

最优化与控制 · 数学 2019-12-02 Mattias Fält , Pontus Giselsson

This article advances the prerequisite network as a means to visualize the hidden structure in an academic curriculum. Network technologies have been used for some time now in social analyses and more recently in biology in the areas of…

社会与信息网络 · 计算机科学 2014-08-25 Preston R. Aldrich

Generation and analysis of time-series data is relevant to many quantitative fields ranging from economics to fluid mechanics. In the physical sciences, structures such as metastable and coherent sets, slow relaxation processes, collective…

Computation has revolutionized science and is gradually making its way into science teaching and learning. However, we currently lack theoretical frameworks to make sense of how students learn to use computation as a disciplinary tool. In…

物理教育 · 物理学 2024-03-26 Tor Ole B. Odden , Benjamin Zwickl

This short course offers a new perspective on randomized algorithms for matrix computations. It explores the distinct ways in which probability can be used to design algorithms for numerical linear algebra. Each design template is…

数值分析 · 数学 2025-09-23 Anastasia Kireeva , Joel A. Tropp

With the rise of computers, simulation models have emerged beside the more traditional statistical and mathematical models as a third pillar for ecological analysis. Broadly speaking, a simulation model is an algorithm, typically…

种群与进化 · 定量生物学 2018-12-24 Florian Hartig

mlpy is a Python Open Source Machine Learning library built on top of NumPy/SciPy and the GNU Scientific Libraries. mlpy provides a wide range of state-of-the-art machine learning methods for supervised and unsupervised problems and it is…

While neural networks are good at learning unspecified functions from training samples, they cannot be directly implemented in hardware and are often not interpretable or formally verifiable. On the other hand, logic circuits are…

The study of trajectories is often a core task in several research fields. In environmental modelling, trajectories are crucial to study fluid pollution, animal migrations, oil slick patterns or land movements. In this contribution, we…

统计计算 · 统计学 2022-09-23 A. Reyes , G. Viera-López , J. J. Morgado-Vega , E. Altshuler

This contribution describes a two-course module that seeks to provide humanities majors with a basic understanding of language technology and its applications using Python. The learning materials consist of interactive Jupyter Notebooks and…

计算与语言 · 计算机科学 2021-12-23 Tuomo Hiippala

Linear Programs (LP) are celebrated widely, particularly so in machine learning where they have allowed for effectively solving probabilistic inference tasks or imposing structure on end-to-end learning systems. Their potential might seem…

人工智能 · 计算机科学 2022-03-30 Matej Zečević , Florian Peter Busch , Devendra Singh Dhami , Kristian Kersting