English

Principles for optimal cooperativity in allosteric materials

Biological Physics 2018-08-01 v3 Materials Science Soft Condensed Matter

Abstract

Allosteric proteins transmit a mechanical signal induced by binding a ligand. However, understanding the nature of the information transmitted and the architectures optimizing such transmission remains a challenge. Here we show using an {\it in-silico} evolution scheme and theoretical arguments that architectures optimized to be cooperative, which propagate efficiently energy, {qualitatively} differ from previously investigated materials optimized to propagate strain. Although we observe a large diversity of functioning cooperative architectures (including shear, hinge and twist designs), they all obey the same principle {of displaying a {\it mechanism}, i.e. an extended {soft} mode}. We show that its optimal frequency decreases with the spatial extension LL of the system as Ld/2L^{-d/2}, where dd is the spatial dimension. For these optimal designs, cooperativity decays logarithmically with LL for d=2d=2 and does not decay for d=3d=3. Overall our approach leads to a natural explanation for several observations in allosteric proteins, and { indicates an experimental path to test if allosteric proteins lie close to optimality}.

Keywords

Cite

@article{arxiv.1708.01820,
  title  = {Principles for optimal cooperativity in allosteric materials},
  author = {Le Yan and Riccardo Ravasio and Carolina Brito and Matthieu Wyart},
  journal= {arXiv preprint arXiv:1708.01820},
  year   = {2018}
}

Comments

11 pages, 9 figures in the main text, 9 pages 9 figures in the supplemental material

R2 v1 2026-06-22T21:07:48.248Z