生物医学图像分析竞赛：当前参与实践的现状
计算机视觉与模式识别
2023-09-13 v2 机器学习
摘要
在国际机器学习（ML）研究与实践的各个领域，国际基准竞赛的数量稳步增长。然而，迄今为止，关于社区在应对所提出研究问题时的常见实践以及面临的瓶颈知之甚少。为阐明生物医学图像分析这一特定领域中算法开发的现状，我们设计了一项国际调查，发放给与 IEEE ISBI 2021 和 MICCAI 2021 会议联合举办的挑战赛（共 80 项）的所有参与者。调查涵盖了参与者的专业背景与工作环境和他们所选择的策略以及算法特征。中位数为 72% 的挑战赛参与者参与了调查。根据我们的结果，知识交流是参与的主要动机（70%），而获得奖金仅起次要作用（16%）。虽然方法开发花费了中位数为 80 个工作小时，但很大一部分参与者表示他们没有足够的时间进行方法开发（32%）。25% 的人认为基础设施是瓶颈。总体而言，94% 的解决方案基于深度学习。其中，84% 基于标准架构。43% 的受访者报告数据样本（例如图像）过大而无法一次性处理。这最常通过基于块（patch）的训练（69%）、下采样（37%）以及将 3D 分析任务作为一系列 2D 任务来解决。仅在训练集上执行 K 折交叉验证的参与者占 37%，仅 50% 的参与者基于多个相同模型（61%）或异构模型（39%）执行集成。48% 的受访者应用了后处理步骤。
引用
@article{arxiv.2212.08568,
title = {Biomedical image analysis competitions: The state of current participation practice},
author = {Matthias Eisenmann and Annika Reinke and Vivienn Weru and Minu Dietlinde Tizabi and Fabian Isensee and Tim J. Adler and Patrick Godau and Veronika Cheplygina and Michal Kozubek and Sharib Ali and Anubha Gupta and Jan Kybic and Alison Noble and Carlos Ortiz de Solórzano and Samiksha Pachade and Caroline Petitjean and Daniel Sage and Donglai Wei and Elizabeth Wilden and Deepak Alapatt and Vincent Andrearczyk and Ujjwal Baid and Spyridon Bakas and Niranjan Balu and Sophia Bano and Vivek Singh Bawa and Jorge Bernal and Sebastian Bodenstedt and Alessandro Casella and Jinwook Choi and Olivier Commowick and Marie Daum and Adrien Depeursinge and Reuben Dorent and Jan Egger and Hannah Eichhorn and Sandy Engelhardt and Melanie Ganz and Gabriel Girard and Lasse Hansen and Mattias Heinrich and Nicholas Heller and Alessa Hering and Arnaud Huaulmé and Hyunjeong Kim and Bennett Landman and Hongwei Bran Li and Jianning Li and Jun Ma and Anne Martel and Carlos Martín-Isla and Bjoern Menze and Chinedu Innocent Nwoye and Valentin Oreiller and Nicolas Padoy and Sarthak Pati and Kelly Payette and Carole Sudre and Kimberlin van Wijnen and Armine Vardazaryan and Tom Vercauteren and Martin Wagner and Chuanbo Wang and Moi Hoon Yap and Zeyun Yu and Chun Yuan and Maximilian Zenk and Aneeq Zia and David Zimmerer and Rina Bao and Chanyeol Choi and Andrew Cohen and Oleh Dzyubachyk and Adrian Galdran and Tianyuan Gan and Tianqi Guo and Pradyumna Gupta and Mahmood Haithami and Edward Ho and Ikbeom Jang and Zhili Li and Zhengbo Luo and Filip Lux and Sokratis Makrogiannis and Dominik Müller and Young-tack Oh and Subeen Pang and Constantin Pape and Gorkem Polat and Charlotte Rosalie Reed and Kanghyun Ryu and Tim Scherr and Vajira Thambawita and Haoyu Wang and Xinliang Wang and Kele Xu and Hung Yeh and Doyeob Yeo and Yixuan Yuan and Yan Zeng and Xin Zhao and Julian Abbing and Jannes Adam and Nagesh Adluru and Niklas Agethen and Salman Ahmed and Yasmina Al Khalil and Mireia Alenyà and Esa Alhoniemi and Chengyang An and Talha Anwar and Tewodros Weldebirhan Arega and Netanell Avisdris and Dogu Baran Aydogan and Yingbin Bai and Maria Baldeon Calisto and Berke Doga Basaran and Marcel Beetz and Cheng Bian and Hao Bian and Kevin Blansit and Louise Bloch and Robert Bohnsack and Sara Bosticardo and Jack Breen and Mikael Brudfors and Raphael Brüngel and Mariano Cabezas and Alberto Cacciola and Zhiwei Chen and Yucong Chen and Daniel Tianming Chen and Minjeong Cho and Min-Kook Choi and Chuantao Xie Chuantao Xie and Dana Cobzas and Julien Cohen-Adad and Jorge Corral Acero and Sujit Kumar Das and Marcela de Oliveira and Hanqiu Deng and Guiming Dong and Lars Doorenbos and Cory Efird and Sergio Escalera and Di Fan and Mehdi Fatan Serj and Alexandre Fenneteau and Lucas Fidon and Patryk Filipiak and René Finzel and Nuno R. Freitas and Christoph M. Friedrich and Mitchell Fulton and Finn Gaida and Francesco Galati and Christoforos Galazis and Chang Hee Gan and Zheyao Gao and Shengbo Gao and Matej Gazda and Beerend Gerats and Neil Getty and Adam Gibicar and Ryan Gifford and Sajan Gohil and Maria Grammatikopoulou and Daniel Grzech and Orhun Güley and Timo Günnemann and Chunxu Guo and Sylvain Guy and Heonjin Ha and Luyi Han and Il Song Han and Ali Hatamizadeh and Tian He and Jimin Heo and Sebastian Hitziger and SeulGi Hong and SeungBum Hong and Rian Huang and Ziyan Huang and Markus Huellebrand and Stephan Huschauer and Mustaffa Hussain and Tomoo Inubushi and Ece Isik Polat and Mojtaba Jafaritadi and SeongHun Jeong and Bailiang Jian and Yuanhong Jiang and Zhifan Jiang and Yueming Jin and Smriti Joshi and Abdolrahim Kadkhodamohammadi and Reda Abdellah Kamraoui and Inha Kang and Junghwa Kang and Davood Karimi and April Khademi and Muhammad Irfan Khan and Suleiman A. Khan and Rishab Khantwal and Kwang-Ju Kim and Timothy Kline and Satoshi Kondo and Elina Kontio and Adrian Krenzer and Artem Kroviakov and Hugo Kuijf and Satyadwyoom Kumar and Francesco La Rosa and Abhi Lad and Doohee Lee and Minho Lee and Chiara Lena and Hao Li and Ling Li and Xingyu Li and Fuyuan Liao and KuanLun Liao and Arlindo Limede Oliveira and Chaonan Lin and Shan Lin and Akis Linardos and Marius George Linguraru and Han Liu and Tao Liu and Di Liu and Yanling Liu and João Lourenço-Silva and Jingpei Lu and Jiangshan Lu and Imanol Luengo and Christina B. Lund and Huan Minh Luu and Yi Lv and Yi Lv and Uzay Macar and Leon Maechler and Sina Mansour L. and Kenji Marshall and Moona Mazher and Richard McKinley and Alfonso Medela and Felix Meissen and Mingyuan Meng and Dylan Miller and Seyed Hossein Mirjahanmardi and Arnab Mishra and Samir Mitha and Hassan Mohy-ud-Din and Tony Chi Wing Mok and Gowtham Krishnan Murugesan and Enamundram Naga Karthik and Sahil Nalawade and Jakub Nalepa and Mohamed Naser and Ramin Nateghi and Hammad Naveed and Quang-Minh Nguyen and Cuong Nguyen Quoc and Brennan Nichyporuk and Bruno Oliveira and David Owen and Jimut Bahan Pal and Junwen Pan and Wentao Pan and Winnie Pang and Bogyu Park and Vivek Pawar and Kamlesh Pawar and Michael Peven and Lena Philipp and Tomasz Pieciak and Szymon Plotka and Marcel Plutat and Fattaneh Pourakpour and Domen Preložnik and Kumaradevan Punithakumar and Abdul Qayyum and Sandro Queirós and Arman Rahmim and Salar Razavi and Jintao Ren and Mina Rezaei and Jonathan Adam Rico and ZunHyan Rieu and Markus Rink and Johannes Roth and Yusely Ruiz-Gonzalez and Numan Saeed and Anindo Saha and Mostafa Salem and Ricardo Sanchez-Matilla and Kurt Schilling and Wei Shao and Zhiqiang Shen and Ruize Shi and Pengcheng Shi and Daniel Sobotka and Théodore Soulier and Bella Specktor Fadida and Danail Stoyanov and Timothy Sum Hon Mun and Xiaowu Sun and Rong Tao and Franz Thaler and Antoine Théberge and Felix Thielke and Helena Torres and Kareem A. Wahid and Jiacheng Wang and YiFei Wang and Wei Wang and Xiong Wang and Jianhui Wen and Ning Wen and Marek Wodzinski and Ye Wu and Fangfang Xia and Tianqi Xiang and Chen Xiaofei and Lizhan Xu and Tingting Xue and Yuxuan Yang and Lin Yang and Kai Yao and Huifeng Yao and Amirsaeed Yazdani and Michael Yip and Hwanseung Yoo and Fereshteh Yousefirizi and Shunkai Yu and Lei Yu and Jonathan Zamora and Ramy Ashraf Zeineldin and Dewen Zeng and Jianpeng Zhang and Bokai Zhang and Jiapeng Zhang and Fan Zhang and Huahong Zhang and Zhongchen Zhao and Zixuan Zhao and Jiachen Zhao and Can Zhao and Qingshuo Zheng and Yuheng Zhi and Ziqi Zhou and Baosheng Zou and Klaus Maier-Hein and Paul F. Jäger and Annette Kopp-Schneider and Lena Maier-Hein},
journal= {arXiv preprint arXiv:2212.08568},
year = {2023}
}