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Electrophoretic separations of proteins are widely used in proteomic analyses, and rely heavily on SDS electrophoresis. This mode of separation is almost exclusively used when a single dimension separation is performed, and generally…

Genomics · Quantitative Biology 2010-05-07 Thierry Rabilloud

On the basis of the physico-chemical principles underlying silver-staining of proteins, which are recalled in this paper, several methods of silver-staining of proteins after SDS electrophoresis in polyacrylamide gels or isoelectric…

Genomics · Quantitative Biology 2009-11-24 Thierry Rabilloud , L. Vuillard , C. Gilly , J. J. Lawrence

Two-dimensional electrophoresis is still a very valuable tool in proteomics, due to its reproducibility and its ability to analyze complete proteins. However, due to its sensitivity to dynamic range issues, its most suitable use in the…

Genomics · Quantitative Biology 2013-09-11 Thierry Rabilloud , Sarah Triboulet

We suggest to augment standard isoelectronic focusing for separation of proteins in a gradient of pH by a similar focusing in the presence of a strongly charged polyelectrolyte (PE). Proteins which have the same isoelectric point but…

Condensed Matter · Physics 2009-11-07 E. M. Baskin , B. I. Shklovskii , G. V. Zilberstein

Silver staining is used to detect proteins after electrophoretic separation on polyacrylamide gels. It -combines excellent sensitivity (in the low nanogram range) with the use of very simple and cheap equipment and chemicals. For its use in…

Genomics · Quantitative Biology 2012-06-15 Thierry Rabilloud

This work presents a simply methodology for coating small unilamellar liposomes bearing different degrees of positive charge with polyelectrolyte multilayers using the sequential Layer-by-Layer (LbL) deposition method. The liposomes were…

Understanding the molecular mechanisms driving the binding between bio-molecules is a crucial challenge in molecular biology. In this respect, characteristics like the preferentially hydrophobic composition of the binding interfaces, the…

Here, we report a facile method for electro-addressable functionalization of a probe comprising of closely spaced three individually addressable carbon fiber electrodes for detection of nucleic acids. First, a multi electrode array probe…

Instrumentation and Detectors · Physics 2018-02-08 Mustafa Sen

We use a coarse-grained molecular dynamics model to study the electrophoretic behaviour of flexible polyelectrolyte chains. We first characterize the static properties of the model with respect to the chain length, the polyelectrolyte…

Soft Condensed Matter · Physics 2008-12-16 Kai Grass , Christian Holm

We realize a biochemical filtering process by introducing a buffer in a biocatalytic signal-transduction logic system based on the function of an enzyme, esterase. The input, ethyl butyrate, is converted into butyric acid-the output signal,…

Soft Condensed Matter · Physics 2017-09-13 Marcos Pita , Vladimir Privman , Mary A. Arugula , Dmitriy Melnikov , Vera Bocharova , Evgeny Katz

Polyelectrolytes, such as polyacrylic acid (PAA), can effectively mitigate $\mathrm{CaCO_3}$ scale formation. Despite their success as antiscalants, the underlying mechanism of $\mathrm{Ca^{2+}}$ binding to polyelectrolyte chains remains…

Soft Condensed Matter · Physics 2024-03-21 Sriteja Mantha , Alec Glisman , Decai Yu , Eric Wasserman , Scott Backer , Zhen-Gang Wang

Protein detection on SDS gels or on 2-D gels must combine several features, such as sensitivity, homogeneity from one protein to another, speed, low cost, and user-friendliness. For some applications, it is also interesting to have a…

Genomics · Quantitative Biology 2007-10-04 Sylvie Luche , Cécile Lelong , Hélène Diemer , Alain Van Dorsselaer , Thierry Rabilloud

The use of an extra SDS separation in a different buffer system provide a technique for deconvoluting 2D gel spots made of several proteins (Colignon et al. Proteomics, 2013, 13, 2077-2082). This technique keeps the quantitative analysis of…

Genomics · Quantitative Biology 2013-11-18 Thierry Rabilloud

Proteinoids are solidified gels made from poly(amino acids) based polymers that exhibit oscillatory electrical activity. It has been proposed that proteinoids are capable of performing analog computing as their electrical activity can be…

The objective of this project is to develop an automated device used to spot protein samples on a hydrophobic membrane to be used for the patented electrophoresis method developed by Chang and Yonan in 2008 [1]. This novel method performs…

Other Quantitative Biology · Quantitative Biology 2023-03-13 Christopher M. Altenderfer , Frank N. Chang , Parsaoran Hutapea

Silver staining is used to detect proteins after electrophoretic separation on polyacrylamide gels. It combines excellent sensitivity (in the low nanogram range) with the use of very simple and cheap equipment and chemicals. It is…

Genomics · Quantitative Biology 2007-07-02 Mireille Chevallet , Sylvie Luche , Thierry Rabilloud

Porous electrodes{made of hierarchically nanostructured materials{are omnipresent in various electrochemical energy technologies from batteries and supercapacitors to sensors and electrocatalysis. Modeling the system-level macroscopic…

Applied Physics · Physics 2022-02-03 Anis Allagui , Hachemi Benaoum

Previous devices to separate cells by the characteristic force they experience due to dielectrophoresis, which depends on the size and electric properties of the particle, were limited by the flow rates and particle concentrations…

Applied Physics · Physics 2020-09-08 Ngoc-Duy Dinh , Dinh-Tuan Phan

We present an experimentally guided, multi-phase, multi-species polyelectrolyte gel model to make quantitative predictions on the electro-chemical properties of articular cartilage. The mixture theory consists of two different types of…

Tissues and Organs · Quantitative Biology 2013-08-22 Sarthok Sircar , Elizabeth Aisenbrey , Stephanie J. Bryant , David M. Bortz

Electrochemical quartz crystal microbalance (EC-QCM) is a versatile gravimetric technique that allows for parallel characterization of mass deposition and electrochemical properties. Despite its broad applicability, simultaneous…

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