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Disordered systems theory provides powerful tools to analyze the generic behaviors of highdimensional systems, such as species-rich ecological communities or neural networks. By assuming randomness in their interactions, universality…

Populations and Evolution · Quantitative Biology 2025-03-20 Juan Giral Martínez

This paper develops a point-mutation model describing the evolutionary dynamics of a population of adult stem cells. Such a model may prove useful for quantitative studies of tissue aging and the emergence of cancer. We consider two modes…

Tissues and Organs · Quantitative Biology 2009-11-10 Emmanuel Tannenbaum , James L. Sherley , Eugene I. Shakhnovich

Evolution has fascinated quantitative and physical scientists for decades: how can the random process of mutation, recombination, and duplication of genetic information generate the diversity of life? What determines the rate of evolution?…

Populations and Evolution · Quantitative Biology 2018-04-23 Richard A. Neher , Aleksandra M. Walczak

The correlation functions related to topological phase transitions in inversion-symmetric lattice models described by $2\times 2$ Dirac Hamiltonians are discussed. In one dimension, the correlation function measures the charge-polarization…

Mesoscale and Nanoscale Physics · Physics 2017-02-08 Wei Chen , Markus Legner , Andreas Rüegg , Manfred Sigrist

A key goal of systems biology is the predictive mathematical description of gene regulatory circuits. Different approaches are used such as deterministic and stochastic models, models that describe cell growth and division explicitly or…

Molecular Networks · Quantitative Biology 2012-10-12 Rahul Marathe , Veronika Bierbaum , David Gomez , Stefan Klumpp

We explore situations in which certain stochastic and high-dimensional deterministic systems behave effectively as low-dimensional dynamical systems. We define and study moment maps, maps on spaces of low-order moments of evolving…

Other Condensed Matter · Physics 2016-08-31 D. Barkley , I. G. Kevrekidis , A. M. Stuart

We study a coarsening process of one-dimensional cell complexes. We show that if cell boundaries move with velocities proportional to the difference in size of neighboring cells, then the average cell size grows at a prescribed exponential…

Probability · Mathematics 2015-12-03 Emanuel Lazar , Robin Pemantle

We study the space-time correlation and response functions in nonequilibrium growth processes described by linear stochastic Langevin equations. Exploiting exclusively the existence of space and time dependent symmetries of the noiseless…

Statistical Mechanics · Physics 2015-05-22 Andreas Roethlein , Florian Baumann , Michel Pleimling

Genomic evolution can be viewed as string-editing processes driven by mutations. An understanding of the statistical properties resulting from these mutation processes is of value in a variety of tasks related to biological sequence data,…

Information Theory · Computer Science 2018-12-07 Hao Lou , Farzad Farnoud , Moshe Schwartz , Jehoshua Bruck

Stochastic models, based on random processes, may lead to power law distributions, which provide long range correlations. The observation of power law behavior and the presence of long range correlations in biological systems has been…

Statistical Mechanics · Physics 2008-03-26 Thomas Oikonomou

We give an explicit stochastic Hamiltonian model of discontinuous unitary evolution for quantum spontaneous jumps like in a system of atoms in quantum optics, or in a system of quantum particles that interacts singularly with "bubbles"…

Quantum Physics · Physics 2009-11-11 V. P. Belavkin , O. Melsheimer

Possibility to establish macroscopic phenomenological theory for biological systems, akin to the akin to the well-established framework of thermodynamics, is briefly reviewed. We introduce the concept of an evolutionary fluctuation-response…

Biological Physics · Physics 2024-01-11 Kunihiko Kaneko

. We study the evolution of the distribution of eigenvalues of a $N\times N$ matrix subject to a random perturbation drawn from (i) a generalized Gaussian ensemble (ii) a non-Gaussian ensemble with a measure variable under the change of…

Mesoscale and Nanoscale Physics · Physics 2009-10-31 Pragya Shukla

Stochastic dynamics of a quantum system driven by $N$ statistically independent random sudden quenches in a fixed time interval is studied. We reveal that with growing $N$ the system approaches a deterministic limit indicating…

Quantum Physics · Physics 2018-08-15 Marcin Łobejko , Jerzy Dajka , Jerzy Łuczka

Introducing a general class of one-dimensional single-file systems (meaning that particle crossings are prohibited) of interacting hardcore particles with internal degrees of freedom (called charge), we exhibit a novel type of dynamical…

Statistical Mechanics · Physics 2024-03-11 Žiga Krajnik , Johannes Schmidt , Vincent Pasquier , Tomaž Prosen , Enej Ilievski

We solve a long-standing puzzle in Statistical Mechanics of disordered systems. By performing a high-statistics simulation of the D=3 random-field Ising model at zero temperature for different shapes of the random-field distribution, we…

Disordered Systems and Neural Networks · Physics 2013-05-31 Nikolaos G. Fytas , Victor Martin-Mayor

Percolation models with multiple percolating clusters have attracted much attention in recent years. Here we use Monte Carlo simulations to study bond percolation on $L_{1}\times L_{2}$ planar random lattices, duals of random lattices, and…

Statistical Mechanics · Physics 2016-08-31 Hsiao-Ping Hsu , Simon C. Lin , Chin-Kun Hu

We discuss the concept of width-to-spacing ratio which plays the central role in the description of local spectral statistics of evolution operators in multiplicative and additive stochastic processes for random matrices. We show that the…

Mathematical Physics · Physics 2023-07-19 Zdzislaw Burda

We study the critical dynamics of a scalar field theory with $Z_2$ symmetry in the dynamic universality class of Model A in two and three spatial dimensions with classical-statistical lattice simulations. In particular, we measure the…

High Energy Physics - Phenomenology · Physics 2024-11-18 Leon J. Sieke , Mattis Harhoff , Sören Schlichting , Lorenz von Smekal

Consider $(X_{i}(t))$ solving a system of $N$ stochastic differential equations interacting through a random matrix $\mathbf J = (J_{ij})$ with independent (not necessarily identically distributed) random coefficients. We show that the…

Probability · Mathematics 2021-02-03 Amir Dembo , Reza Gheissari