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With a view to connecting random mutation on the molecular level to punctuated equilibrium behavior on the phenotype level, we propose a new model for biological evolution, which incorporates random mutation and natural selection. In this…

Condensed Matter · Physics 2009-10-28 M. Y. Choi , H. Y. Lee , D. Kim , S. H. Park

Probabilistic cellular automata with deterministic updating are quantum systems. We employ the quantum formalism for an investigation of random probabilistic cellular automata, which start with a probability distribution over initial…

Quantum Physics · Physics 2024-05-17 A. Kreuzkamp , C. Wetterich

We study the intersection points of a fixed planar curve $\Gamma$ with the nodal set of a translationally invariant and isotropic Gaussian random field $\Psi(\bi{r})$ and the zeros of its normal derivative across the curve. The intersection…

Chaotic Dynamics · Physics 2009-11-13 Amit Aronovitch , Uzy Smilansky

Conformational change of a DNA molecule is frequently observed in multiple biological processes and has been modelled using a chain of strongly coupled oscillators with a nonlinear bistable potential. While the mechanism and properties of…

Biological Physics · Physics 2020-08-07 Soumyadip Banerjee , Kushal Shah , Shaunak Sen

Phenomena as diverse as breeding bird populations, the size of U.S. firms, money invested in mutual funds, the GDP of individual countries and the scientific output of universities all show unusual but remarkably similar growth…

Physics and Society · Physics 2010-05-03 Yonathan Schwarzkopf , Robert L. Axtell , J. Doyne Farmer

Understanding how stochastic and non-linear deterministic processes interact is a major challenge in population dynamics theory. After a short review, we introduce a stochastic individual-centered particle model to describe the evolution in…

Probability · Mathematics 2009-06-29 Regis Ferriere , Viet Chi Tran

We study a universal object for the genealogy of a sample in populations with mutations: the critical birth-death process with Poissonian mutations, conditioned on its population size at a fixed time horizon. We show how this process arises…

Probability · Mathematics 2014-07-30 G. Achaz , C. Delaporte , A. Lambert

Understanding the patterns and processes of diversification of life in the planet is a key challenge of science. The Tree of Life represents such diversification processes through the evolutionary relationships among the different taxa, and…

Populations and Evolution · Quantitative Biology 2011-06-16 E. Alejandro Herrada , Claudio J. Tessone , Konstantin Klemm , Victor M. Eguiluz , Emilio Hernandez-Garcia , Carlos M. Duarte

The competitive growth models involving only one kind of particles (CGM), are a mixture of two processes one with probability $p$ and the other with probability $1-p$. The $p-$dependance produce crossovers between two different regimes. We…

Disordered Systems and Neural Networks · Physics 2009-11-10 D. Muraca , L. A. Braunstein , R. C. Buceta

We consider critical one dimensional quantum systems initially prepared in their groundstate and perturbed by a smooth noise coupled to the energy density. By using conformal field theory, we deduce a universal description of the…

Statistical Mechanics · Physics 2023-04-04 Alexios Christopoulos , Pierre Le Doussal , Denis Bernard , Andrea De Luca

Non-universal dynamics is shown to occur in a one-dimensional non-equilibrium system of hard-core particles. The stochastic processes included are pair creation and annihilation (with rates e and e') and symmetric hopping rates which…

Statistical Mechanics · Physics 2009-10-31 R. B. Stinchcombe , J. E. Santos , M. D. Grynberg

We study the stochastic evolution of four species in cyclic competition in a well mixed environment. In systems composed of a finite number $N$ of particles these simple interaction rules result in a rich variety of extinction scenarios,…

Statistical Mechanics · Physics 2012-07-09 C. H. Durney , S. O. Case , M. Pleimling , R. K. P. Zia

The number of substitutions (of nucleotides, amino acids, ...) that take place during the evolution of a sequence is a stochastic variable of fundamental importance in the field of molecular evolution. Although the mean number of…

Populations and Evolution · Quantitative Biology 2016-02-17 Bahram Houchmandzadeh , Marcel Vallade

We perform an analytical analysis of the long-range degree correlation of the giant component in an uncorrelated random network by employing generating functions. By introducing a characteristic length, we find that a pair of nodes in the…

Physics and Society · Physics 2020-12-14 Shogo Mizutaka , Takehisa Hasegawa

We report on an experimental observation of classical diffusion distinguishing between structural universality classes of disordered systems in one dimension. Samples of hyperuniform and short-range disorder were designed, characterized by…

Mesoscale and Nanoscale Physics · Physics 2017-12-05 Antonios Papaioannou , Dmitry S. Novikov , Els Fieremans , Gregory S. Boutis

In order to characterise non-equilibrium growth processes, we study the behaviour of global quantities that depend in a non-trivial way on two different times. We discuss the dynamical scaling forms of global correlation and response…

Statistical Mechanics · Physics 2015-05-19 Yen-Liang Chou , Michel Pleimling

We study the spreading of information in a wide class of quantum systems, with variable-range interactions. We show that, after a quench, it generally features a double structure, whose scaling laws are related to a set of universal…

Statistical Mechanics · Physics 2018-07-09 Lorenzo Cevolani , Julien Despres , Giuseppe Carleo , Luca Tagliacozzo , Laurent Sanchez-Palencia

We investigate percolation on growing networks where the evolution of connected components resembles a non-equilibrium version of the multiplicative coalescent. The supercritical $\pi> \pi_c$ regime for a host of such models was conjectured…

Probability · Mathematics 2025-12-18 Sayan Banerjee , Shankar Bhamidi , Remco van der Hofstad , Rounak Ray

Unitarity of the global evolution is an extremely stringent condition on finite state models in discrete spacetime. Quantum cellular automata, in particular, are tightly constrained. In previous work we proved a simple No-go Theorem which…

Quantum Physics · Physics 2008-02-03 David A. Meyer

We consider statistical tasks in high dimensions whose loss depends on the data only through its projection into a fixed-dimensional subspace spanned by the parameter vectors and certain ground truth vectors. This includes classifying…

Machine Learning · Statistics 2025-12-23 Reza Gheissari , Aukosh Jagannath
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