Related papers: Abstract DNA-type systems
We consider a new approach to the description of the collective behavior of complex systems of mathematical biology based on the evolution equations for observables of such systems. This representation of the kinetic evolution seems, in…
In the present paper we investigate the influence of inhomogeneities in the dynamics and stability of DNA open states, modeled as propagating solitons in the spirit of a Generalized Yakushevish Model. It is a direct consecuence of our model…
Numerous aqueous systems host elements in multiple redox states, with wide ranging implications such as their influence on the formation/dissolution of minerals, water toxicity, and nutrient cycling. To uncover governing mechanisms and…
We analyze the morphological transition of a one-dimensional system described by a scalar field, where a flat state looses its stability. This scalar field may for example account for the position of a crystal growth front, an order…
Complementary DNA strands in solution reliably hybridize to form stable duplexes. We study the kinetics of the hybridization process and the mechanisms by which two initially isolated strands come together to form a stable double helix. We…
One unusual property of dynamic systems, whose state is characterized by a set of scalar dynamic variables satisfying a system of differential equations of a general form, is considered. This property is related to the behavior of equations…
We investigate the soliton structure of novel (2+1)-dimensional nonlinear partial differential evolution(NLPDE) equations which may govern the behavior of a barothropic relaxing medium beneath high-frequency perturbations. As a result, we…
We investigate some aspects of the soliton dynamics in an alpha-helical protein macromolecule within the steric Davydov-Scott model. Our main objective is to elucidate the important role of the helical symmetry in the formation, stability…
Hamiltonians of a wide-spread class of strongly coupled quantum system models are expressed as nonlinear functions of $sl(2)$ generators. It enables us to use the $sl(2)$ formalism, in particular, $sl(2)$ generalized coherent states (GCS)…
We introduce a class of ${\mathbb{Z}}_N$ graded discrete Lax pairs, with $N\times N$ matrices, linear in the spectral parameter. We give a classification scheme for such Lax pairs and the associated discrete integrable systems. We present…
The folding of a polypeptide is an example of the cooperative effects of the amino-acid residues. Of recent interest is how a secondary structure, such as a helix, spontaneously forms during the collapse of a peptide from an initial…
In this letter, taking the well known (2+1)-dimensional soliton systems, Davey-Stewartson (DS) model and the asymmetric Nizhnik-Novikov-Veselov (ANNV) model, as two special examples, we show that some types of lower dimensional chaotic…
DNA is now firmly established as a versatile and robust platform for achieving synthetic nanostructures. While the folding of single molecules into complex structures is routinely achieved through engineering basepair sequences, much less…
Two families of solutions of a generalized non-Abelian Toda lattice are considered. These solutions are expressed in terms of quasideterminants, constructed by means of Darboux and binary Darboux transformations. As an example of the…
In this paper we extend the standard differential geometric theory of Hamiltonian dynamics to noncommutative spaces, beginning with symplectic forms. Derivations on the algebra are used instead of vector fields, and interior products and…
Dialectical frameworks are a unifying model of formal argumentation, where argumentative relations between arguments are represented by assigning acceptance conditions to atomic arguments. Their generality allow them to cover a number of…
An existence result is proved for a nonlinear diffusion problem of phase-field type, consisting of a parabolic system of two partial differential equations, complemented by Neumann homogeneous boundary conditions and initial conditions.…
We derive generalised multi-flow hydrodynamic reductions of the nonlocal kinetic equation for a soliton gas and investigate their structure. These reductions not only provide further insight into the properties of the new kinetic equation…
A (closed) dynamical system is a notion of how things can be, together with a notion of how they may change given how they are. The idea and mathematics of closed dynamical systems has proven incredibly useful in those sciences that can…
An isospin and spin dependent form of the equation of state for nuclear matter is presented. This form is used for the description of nucleon interaction in a new dynamic model. Preliminary calculations show that the new approach makes…