Related papers: Abstract DNA-type systems
We analyze the problem of the helix-coil transition in explicit solvents analytically by using spin-based models incorporating two different mechanisms of solvent action: explicit solvent action through the formation of solvent-polymer…
We construct Hamiltonians for systems of nonrelativistic particles linearly coupled to massive scalar bosons using abstract boundary conditions. The construction yields an explicit characterisation of the domain of self-adjointness in terms…
The intrinsic dynamics of a system with open decay channels is described by an effective non-Hermitian Hamiltonian which at the same time allows one to find the external dynamics, - reaction cross sections. We discuss ways of incorporating…
A noncommutative version of the semi-discrete Toda equation is considered. A Lax pair and its Darboux transformations and binary Darboux transformations are found and they are used to construct two families of quasideterminant solutions.
A key feature of integrable systems is that they can be solved to obtain exact analytical solutions. We show how new models can be constructed through generalisations of some well known nonlinear partial differential equations with…
An approach to describing nonlinear Lax type integrable dynamical systems of modern mathematical and theoretical physics, based on the Marsden-Weinstein reduction method on canonically symplectic manifolds \ with group symmetry, is…
Three geometric formulations of the Hamiltonian structure of the macroscopic Maxwell equations are given: one in terms of the double de Rham complex, one in terms of L2 duality, and one utilizing an abstract notion of duality. The final of…
The paper investigates the Poisson structures associated with dynamical systems of the heavenly type, focusing on the Mikhalev-Pavlov and Pleba\'nski equation. The dynamical system is represented as a Hamiltonian system on a functional…
Driven dissipative systems at ambient conditions typically exhibit continuous responses shaped by fluctuations and relaxation, with discrete macroscopic states arising only under specific dynamical constraints. Here, we report the emergence…
We review some recent developments in the theory of nonlinear von Neumann equations. We distinguish between the von Neumann equation (which can be nonlinear) and the Liouville equation (which should be linear). Explicit examples illustrate…
We develop a framework to solve a large class of linearly driven non-Hermitian quantum systems. Such a class of models in the Hermitian scenario is commonly known as multi-state Landau-Zener models. The non-hermiticity is due to the…
A method of the formal diagonalization of the discrete linear operator with a parameter is studied. In the case when the operator provides a Lax operator for a nonlinear quad system the formal diagonalization method allows one to describe…
Complementary strands in DNA double helix show temporary fluctuational openings which are essential to biological functions such as transcription and replication of the genetic information. Such large amplitude fluctuations, known as the…
The nonexponential relaxation ocurring in complex dynamics manifested in a wide variety of systems is analyzed through a simple model of diffusion in phase space. It is found that the inability of the system to find its equilibrium state in…
Linear dynamics restricted to invariant submanifolds generally gives rise to nonlinear dynamics. Submanifolds in the quantum framework may emerge for several reasons: one could be interested in specific properties possessed by a given…
Molecular dynamics is based on solving Newton's equations for many-particle systems that evolve along complex, highly fluctuating trajectories. The orbital instability and short-time complexity of Newtonian orbits is in sharp contrast to…
The Lie product and the order relation are viewed as defining structures for Hamiltonian dynamical systems. Their admissible combinations are singled out by the requirement that the group of the Lie automorphisms be contained in the group…
An infinite system of nonlocal, individually confining solitons is considered as a model of high-density nuclear matter. The soliton-lattice problem is discussed in the Wigner-Seitz approximation. The cell size is varied to study the…
We propose a probabilistic framework for developing computational models of biological neural systems. In this framework, physiological recordings are viewed as discrete-time partial observations of an underlying continuous-time stochastic…
We consider some differential geometric classes of local and nonlocal Poisson and symplectic structures on loop spaces of smooth manifolds which give natural Hamiltonian and multihamiltonian representations for some important nonlinear…