Related papers: Breathers in a system with helicity and dipole int…
We investigate the mobility of nonlinear localized modes in a generalized discrete Ginzburg-Landau type model, describing a one-dimensional waveguide array in an active Kerr medium with intrinsic, saturable gain and damping. It is shown…
We study the structure and stability of discrete breathers (both pinned and mobile) in two-dimensional nonlinear anisotropic Schrodinger lattices. Starting from a set of identical one-dimensional systems we develop the continuation of the…
Propagating intrinsic localised modes (discrete breathers) exist in the dissipative driven sine-Gordon chain as attractors of the dynamics. Thermal fluctuations induce random transitions between attracting configurations corresponding to…
Collective coordinate and direct numerical integration methods are applied to the analysis of a one-dimensional DNA model. A modification of the coupling constant in an extended region is found to be less selective towards the breather it…
In this article we prove the existence of a new family of periodic solutions for discrete, nonlinear Schrodinger equations subject to spatially localized driving and damping. They provide an alternate description of the metastable behavior…
In different nonlinear mediums, the wave trains carry energy and expose many amazing features. To describe a nonlinear phenomenon, a soliton is one that preserves its shape and amplitude even after the collision. Breather is one kind of…
While the behavior of double stranded DNA at mesoscopic scales is fairly well understood, less is known about its relation to the rich mechanical properties in the base-pair scale, which is crucial, for instance, to understand DNA-protein…
The existence and stability of dissipative discrete breathers (DDBs) in rf superconducting quantum interference device (SQUID) arrays in both one and two dimensions is investigated numerically. In an rf SQUID array, the nonlinearity which…
Dissipative solitons in optical microcavities have attracted significant attention in recent years due to their direct association with the generation of optical frequency combs. Here, we address the problem of dissipative soliton breathers…
Discrete breathers are time-periodic, spatially localized solutions of the equations of motion for a system of classical degrees of freedom interacting on a lattice. We study the existence of energy thresholds for discrete breathers, i.e.,…
Inspired by the experimental results of Cuevas et al. (Physical Review Letters 102, 224101 (2009)), we consider theoretically the behavior of a chain of planar rigid pendulums suspended in a uniform gravitational field and subjected to a…
The high linear charge density of 20-base-pair oligomers of DNA is shown to lead to a striking non-monotonic dependence of the long-time self-diffusion on the concentration of the DNA in low-salt conditions. This generic non-monotonic…
Breathing solitons are nonlinear waves in which the energy concentrates in a localized and oscillatory fashion. Similarly to stationary solitons, breathers in dissipative systems can form stable bound states displaying molecule-like…
An enhancement of localized nonlinear modes in coupled systems gives rise to a novel type of escape process. We study a spatially one dimensional set-up consisting of a linearly coupled oscillator chain of $N$ mass-points situated in a…
We study the unexpected high flexibility of short dsDNA which recently has been reported by a number of experiments. Via the Langevin dynamics simulation of our Breathing DNA model, first we observe the formation of bubbles within the…
Physico-mechanical properties of polymers in solid state, in particular conditions of their structural transformations, are substantially defined by existence and mobility of elementary nonlinear excitations. The localized oscillatory…
The formation of polaron and its migration in a DNA chain are studied within a semiclassical Peyrard-Biship-Holstein polaron model. Comparing the energetics of the polaron system found from the quantum chemical and semiclassical…
We study the energy transfer in a classical dipole chain of $N$ interacting rigid rotating dipoles. The underlying high--dimensional potential energy landscape is analyzed in particular by determining the equilibrium points and their…
In the present paper we study the impact of dispersion and nonlinearity on DNA dynamics. We rely on the helicoidal Peyrard-Bishop model and use the fact that nonlinear DNA dynamics represents an interplay between nonlinearity and…
We consider the interactions of traveling localized wave solutions with a vertex in a star graph domain that describes multiple Josephson junctions with a common/branch point (i.e., tricrystal junctions). The system is modeled by the…