Related papers: Moving breathers in a bent DNA-related model
Existence of breather (spatially localized, time periodic, oscillatory) solutions of the topological discrete sine-Gordon (TDSG) system, in the regime of weak coupling, is proved. The novelty of this result is that, unlike the systems…
Nonlinear classical Hamiltonian lattices exhibit generic solutions in the form of discrete breathers. These solutions are time-periodic and (typically exponentially) localized in space. The lattices exhibit discrete translational symmetry.…
We give definitions for different types of moving spatially localized objects in discrete nonlinear lattices. We derive general analytical relations connecting frequency, velocity and localization length of moving discrete breathers and…
The paper addresses compact oscillatory states (compact breathers) in translationally-invariant lattices with flat dispersion bands. The compact breathers appear in such systems even in the linear approximation. If the interactions are…
We prove the existence of discrete breathers (time-periodic, spatially localized solutions) in weakly coupled ferromagnetic spin chains with easy-axis anisotropy. Using numerical methods we then investigate the continuation of discrete…
As a key molecule of Life, Deoxyribonucleic acid (DNA) is the focus of numbers of investigations with the help of biological, chemical and physical techniques. From a physical point of view, both experimental and theoretical works have…
We report the ejection of atoms at a crystal surface caused by energetic breathers which have travelled more than 10^7 unit cells in atomic chain directions. The breathers were created by bombardment of a crystal face with heavy ions. This…
The flexibility of short DNA fragments is studied by a Hamiltonian model which treats the inter-strand and intra-strand forces at the level of the base pair. The elastic response of a set of homogeneous helices to externally applied forces…
We study the unexpected high flexibility of short dsDNA which recently has been reported by a number of experiments. Via the Langevin dynamics simulation of our Breathing DNA model, first we observe the formation of bubbles within the…
We study the asymptotic dynamics of breathers in finite Fermi-Pasta-Ulam chains at zero and non-zero temperatures. While such breathers are essentially stationary and very long-lived at zero temperature, thermal fluctuations tend to lead to…
Recently, using a numerical surface cooling approach, we have shown that highly energetic discrete breathers (DB) can form in the stiffest parts of nonlinear network models of large protein structures. In the present study, using an…
Transient bonds between fast linkers and slower particles are widespread in physical and biological systems. In spite of their diverse structure and function, a commonality is that the linkers diffuse on timescales much faster compared to…
We apply a recently-developed coarse-grained model of DNA, designed to capture the basic physics of nanotechnological DNA systems, to the study of a `burnt-bridges' DNA motor consisting of a single-stranded cargo that steps processively…
We study metastable behavior in a discrete nonlinear Schr\"odinger equation from the viewpoint of Hamiltonian systems theory. When there are $n < \infty$ sites in this equation, we consider initial conditions in which almost all the energy…
This work focuses on the study of time-periodic solutions, including breathers, in a nonlinear lattice consisting of elements whose contacts alternate between strain-hardening and strain-softening. The existence, stability, and bifurcation…
A bent chain of coupled Morse oscillators with long-range dispersive interaction is considered. Moving localized excitations may be trapped in the bending region. Thus chain geometry acts like an impurity. An energy funneling effect is…
We consider a chain of torsionally-coupled, planar pendula shaken horizontally by an external sinusoidal driver. It has been known that in such a system, theoretically modeled by the discrete sine-Gordon equation, intrinsic localized modes,…
Recent experiments indicated that disorder effect in DNA may lead to a transition of the charge transport mechanism from band resonant tunnelling to thermal activated hopping. In this letter, based on Mott's variable-range hopping theory we…
Some recent results for a three--dimensional, semi--classical, tight--binding model for DNA show that there are two types of polarons, named radial and twist polarons, that can transport charge along the DNA molecule. However, the existence…
A quantum breather on a translationally invariant one-dimensional anharmonic lattice is an extended Bloch state with two or more particles in a strongly correlated state. We discuss several effects that break the lattice symmetry and lead…