Related papers: Moving breathers in a bent DNA-related model
We propose a model Hamiltonian for describing charge transport through short homogeneous double stranded DNA molecules. We show that the hybridization of the overlapping pi orbitals in the base-pair stack coupled to the backbone is…
On a two-dimensional planar parity-time-($\mathcal{PT}$-)symmetric nonlinear magnetic metamaterial, consisting of split-ring dimers with balanced gain and loss, discrete breather solutions can be found. We extend these studies and by…
We introduce a one dimensional parity-time (PT)-symmetric nonlinear magnetic metamaterial consisted of split ring dimers having both gain and loss. When nonlinearity is absent we find a transition between an exact to a broken PT-phase; in…
We investigate the properties of discrete breathers in a Bose-Einstein condensate with two- and three-body interactions in optical lattice. In the tight-binding approximation the Gross-Pitaevskii equation with periodic potential for the…
We investigate the behaviour of a chain of interacting Brownian particles with one end fixed and the other moving away at slow speed, in the limit of small noise. The interaction between particles is through a pairwise potential with finite…
We present a systematic study of the existence and stability of discrete breathers that are spatially localized in the bulk of a one-dimensional chain of compressed elastic beads that interact via Hertzian contact. The chain is diatomic,…
We review research on the role of nonlinear coherent phenomena (e.g breathers and kinks) in the formation linear decorations in mica crystal. The work is based on a new model for the motion of the mica hexagonal K layer, which allows…
In one-dimensional translationally invariant anharmonic lattices, an extended Bloch state with two or more strongly correlated particles is usually called a quantum breather. Here we study an attractive fermionic Hubbard model with two kind…
We discuss the existence of breathers and lower bounds on their power, in nonlinear Schr\"odinger lattices with nonlinear hopping. Our methods extend from a simple variational approach to fixed point arguments, deriving lower bounds for the…
We consider the two-dimensional Fermi-Pasta-Ulam lattice with hexagonal honeycomb symmetry, which is a Hamiltonian system describing the evolution of a scalar-valued quantity subject to nearest neighbour interactions. Using multiple-scale…
We describe results concerning the existence proofs of Discrete Breathers (DBs) in the two classes of dynamical systems with optical linear phonons and with acoustic linear phonons. A standard approach is by continuation of DBs from an…
Discrete breathers are time-periodic, spatially localized solutions of equations of motion for classical degrees of freedom interacting on a lattice. They come in one-parameter families. We report on studies of energy properties of breather…
We consider force-induced unzipping transition for a heterogeneous DNA model with a correlated base-sequence. Both finite-range and long-range correlated situations are considered. It is shown that finite-range correlations increase…
We demonstrate that period-doubled discrete breathers appear from the anti-continuum limit of the driven Peyrard-Bishop-Dauxois model of DNA. These novel breathers result from a stability overlap between sub-harmonic solutions of the driven…
Artificial intelligence in the form of deep learning is now very popular and directly implemented in many areas of science and technology. In the present work we study time evolution of Discrete Breathers in one-dimensional nonlinear chains…
We show that the parity-time (PT) symmetric coupled optical waveguides with gain and loss support localised oscillatory structures similar to the breathers of the classical $\phi^4$ model. The power carried by the PT-breather oscillates…
Anomalous non-exponential relaxation in hydrated biomolecules is commonly attributed to the complexity of the free-energy landscapes, similarly to polymers and glasses. It was found recently that the hydrogen-bond breathing of terminal DNA…
We study the scattering of a moving discrete breather (DB) on a junction in a Fermi-Pasta-Ulam (FPU) chain consisting of two segments with different masses of the particles. We consider four distinct cases: (i) a light-heavy (abrupt)…
A model of self-avoiding walk with suitable constraints on self-attraction is developed to describe the conformational behaviour of a single stranded short DNA molecule that form hairpin structure. Using exact enumeration method we…
We present a family of discrete breathers, which exists in a nonlinear polarizability model of ferroelectric materials. The core-shell model is set up in its non-dimensionalized Hamiltonian form and its linear spectrum is examined.…