Related papers: Polygonal knot space near ropelength-minimized kno…
The probability of a random polygon (or a ring polymer) having a knot type $K$ should depend on the complexity of the knot $K$. Through computer simulation using knot invariants, we show that the knotting probability decreases exponentially…
We define the knotting probability of a knot $K$ by the probability for a random polygon (RP) or self-avoiding polygon (SAP) of $N$ segments having the knot type $K$. We show fundamental and generic properties of the knotting probability…
The ropelength of a knot is the minimum contour length of a tube of unit radius that traces out the knot in three dimensional space without self-overlap, colloquially the minimum amount of rope needed to tie a given knot. Theoretical upper…
Several nontrivial properties are shown for the mean square radius of gyration $R_K^2$ of ring polymers with a fixed knot type K. Through computer simulation, we discuss both finite-size and asymptotic behaviors of the gyration radius under…
The thickness, NIR(K) of a knot or link K is defined to be the radius of the largest solid tube one can put around the curve without any self intersections, which is also known as the normal injectivity radius of K. For C^{1,1} curves K,…
We have examined the behaviors of a knotted linear polymer in narrow tubes using Langevin dynamics simulation to investigate the knot localization property in one-dimensional (1D) geometry. We have found that the knot is strongly localized…
We consider the space of all smooth knots in the 3-sphere isotopic to a given knot, with the aim of finding a small subspace onto which this large space deformation retracts. For torus knots and many hyperbolic knots we show the subspace…
In this paper we examine the relative knotting probabilities in a lattice model of ring polymers confined in a cavity. The model is of a lattice knot of size $n$ in the cubic lattice, confined to a cube of side-length $L$ and with volume…
Let $P(K)$ be a satellite knot where the pattern, $P$, is a Berge-Gabai knot (i.e., a knot in the solid torus with a non-trivial solid torus Dehn surgery), and the companion, $K$, is a non-trivial knot in $S^3$. We prove that $P(K)$ is an…
We present computer simulations to examine probability distributions of gyration radius for the no-thickness closed polymers of N straight segments of equal length. We are particularly interested in the conditional distributions when the…
A slope $p/q$ is said to be characterizing for a knot $K$ if the homeomorphism type of the $p/q$-Dehn surgery along $K$ determines the knot up to isotopy. Extending previous work of Lackenby and McCoy on hyperbolic and torus knots…
In this note, we attempt to find counterexamples to the conjecture that the ideal form of a knot, that which minimizes its contour length while respecting a no-overlap constraint, also minimizes the volume of the knot, as determined by its…
Let K be a tame knot with irreducible exterior M(K) in a closed, connected, orientable 3--manifold Sigma such that pi_1(Sigma) is cyclic. If infinity is not a strict boundary slope, then the diameter of the set of strict boundary slopes of…
We study knotted polymers in equilibrium with an array of obstacles which models confinement in a gel or immersion in a melt. We find a crossover in both the geometrical and the topological behavior of the polymer. When the polymers' radius…
A polynomial knot in $\mathbb{R}^n$ is a smooth embedding of $\mathbb{R}$ in $\mathbb{R}^n$ such that the component functions are real polynomials. In the earlier paper with Mishra, we have studied the space $\mathcal{P}$ of polynomial…
We begin the systematic study of knot polynomials for the twist satellites of a knot, when its strand is substituted by a 2-strand twist knot. This is a generalization of cabling (torus satellites), when the substitute of the strand was a…
Using a lattice model of polymers in a tube, we define one way to characterise different configurations of a given knot as either "local" or "non-local" and, for several ring polymer models, we provide both theoretical and numerical…
The image of a polygonal knot K under a spherical inversion of R^3 (union infinity) is a simple closed curve made of arcs of circles, having the same knot type as the mirror image of K. Suppose we reconnect the vertices of the inverted…
Let $D$ be a diagram of an alternating knot with unknotting number one. The branched double cover of $S^3$ branched over $D$ is an L-space obtained by half integral surgery on a knot $K_D$. We denote the set of all such knots $K_D$ by…
It is nontrivial whether the average size of a ring polymer should become smaller or larger under a topological constraint. Making use of some knot invariants, we evaluate numerically the mean square radius of gyration for ring polymers…