English

Relative knot probabilities in confined lattice polygons

Soft Condensed Matter 2025-03-17 v3 Other Condensed Matter Geometric Topology

Abstract

In this paper we examine the relative knotting probabilities in a lattice model of ring polymers confined in a cavity. The model is of a lattice knot of size nn in the cubic lattice, confined to a cube of side-length LL and with volume V=(L+1)3V=(L{+}1)^3 sites. We use Monte Carlo algorithms to approximately enumerate the number of conformations of lattice knots in the confining cube. If pn,L(K)p_{n,L}(K) is the number of conformations of a lattice polygon of length nn and knot type KK in a cube of volume L3L^3, then the relative knotting probability of a lattice polygon to have knot type KK, relative to the probability that the polygon is the unknot (the trivial knot, denoted by 010_1), is ρn,L(K/01)=pn,L(K)/pn,L(01)\rho_{n,L}(K/0_1) = p_{n,L}(K)/p_{n,L}(0_1). We determine ρn,L(K/01)\rho_{n,L}(K/0_1) for various knot types KK up to six crossing knots. Our data show that these relative knotting probabilities are small so that the model is dominated by lattice polygons of knot type the unknot. Moreover, if the concentration of the monomers of the lattice knot is φ=n/V\varphi = n/V, then the relative knot probability increases with φ\varphi along a curve that flattens as the Hamiltonian state is approached.

Cite

@article{arxiv.2501.08835,
  title  = {Relative knot probabilities in confined lattice polygons},
  author = {EJ Janse van Rensburg and E Orlandini and MC Tesi},
  journal= {arXiv preprint arXiv:2501.08835},
  year   = {2025}
}

Comments

Updated version 10 March 2025 with rectified data in the tables, and in some of the figures

R2 v1 2026-06-28T21:07:13.849Z