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This paper introduces a method to generate hierarchically modular networks with prescribed node degree list and proposes a metric to measure network modularity based on the notion of edge distance. The generated networks are used as test…

Neural and Evolutionary Computing · Computer Science 2009-03-17 Susan Khor

This paper provides an elementary, self-contained analysis of diffusion-based sampling methods for generative modeling. In contrast to existing approaches that rely on continuous-time processes and then discretize, our treatment works…

Machine Learning · Statistics 2025-06-25 Galen Reeves , Henry D. Pfister

Biological information processing manifests a huge variety in its complexity and capability among different organisms, which presumably stems from the evolutionary optimization under limited computational resources. Starting from the…

Biological Physics · Physics 2025-10-21 Takehiro Tottori , Tetsuya J. Kobayashi

We present superconducting quantum circuits which exhibit atomic energy spectrum and selection rules as ladder and lambda three-level configurations designed by means of genetic algorithms. These heuristic optimization techniques are…

Quantum Physics · Physics 2025-06-17 F. A. Cárdenas-López , J. C. Retamal , Xi Chen , G. Romero , M. Sanz

Superconducting circuits reveal themselves as promising physical devices with multiple uses. Within those uses, the fundamental concept of the geometric phase accumulated by the state of a system shows up recurrently, as, for example, in…

Quantum Physics · Physics 2024-01-23 Ludmila Viotti , Fernando C. Lombardo , Paula I. Villar

Here we present the entropic dynamics formalism for networks. That is, a framework for the dynamics of graphs meant to represent a network derived from the principle of maximum entropy and the rate of transition is obtained taking into…

Physics and Society · Physics 2021-04-29 Felipe Xavier Costa , Pedro Pessoa

In many complex systems, the dynamic processes that take place on a network and the changes in the network topology are intertwined. Here, we propose a model of coevolutionary dynamics of information spreading which is accompanied with link…

Physics and Society · Physics 2023-11-01 Jeehye Choi , Byungjoon Min

Cells can be considered as systems that utilize changes in thermodynamic entropy as information. Therefore, they serve as useful models for investigating the relationships between entropy production and information transmission, i.e.,…

Molecular Networks · Quantitative Biology 2017-03-09 Tatsuaki Tsuruyama

We use elementary variational arguments to prove, and improve on, gap estimates which arise in simulating quantum circuits by adiabatic evolution.

Quantum Physics · Physics 2009-01-14 Percy Deift , Mary Beth Ruskai , Wolfgang Spitzer

We present a measure of local information transfer, derived from an existing averaged information-theoretical measure, namely transfer entropy. Local transfer entropy is used to produce profiles of the information transfer into each…

Cellular Automata and Lattice Gases · Physics 2008-09-22 Joseph T. Lizier , Mikhail Prokopenko , Albert Y. Zomaya

Networks are important representations in computer science to communicate structural aspects of a given system of interacting components. The evolution of a network has several topological properties that can provide us information on the…

Social and Information Networks · Computer Science 2020-04-30 Joao Pita Costa , Tihana Galinac Grbac

"Standard" information theory says nothing about the semantic content of information. Nevertheless, applications such as evolutionary theory demand consideration of precisely this aspect of information, a need that has motivated a largely…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Edward D. Weinberger

The brain may adopt the strategy of lateral predictive coding (LPC) to construct optimal internal representations for salient features in input sensory signals, reducing the energetic cost of information transmission. Here we first consider…

Neurons and Cognition · Quantitative Biology 2025-09-04 Zhen-Ye Huang , Weikang Wang , Hai-Jun Zhou

We propose a framework for the derivation and evaluation of distributed iterative algorithms for receiver cooperation in interference-limited wireless systems. Our approach views the processing within and collaboration between receivers as…

Information Theory · Computer Science 2012-04-18 Mihai-Alin Badiu , Carles Navarro Manchón , Vasile Bota , Bernard Henri Fleury

Data-driven modeling of complex physical systems is receiving a growing amount of attention in the simulation and machine learning communities. Since most physical simulations are based on compute-intensive, iterative implementations of…

Sound · Computer Science 2024-03-20 Martin Spitznagel , Janis Keuper

In this paper a class of dynamical systems describing expectation variables exactly derived from continuous-time master equations is introduced and studied from the viewpoint of differential geometry, where such master equations consist of…

Mathematical Physics · Physics 2018-11-05 Shin-Itiro Goto , Hideitsu Hino

Evolvable hardware (EHW) is a set of techniques that are based on the idea of combining reconfiguration hardware systems with evolutionary algorithms. In other word, EHW has two sections; the reconfigurable hardware and evolutionary…

Neural and Evolutionary Computing · Computer Science 2011-10-06 Parisa Soleimani , Reza Sabbaghi-Nadooshan , Sattar Mirzakuchaki , Mahdi Bagheri

We consider a model for substrate-depletion oscillations in genetic systems, based on a stochastic differential equation with a slowly evolving external signal. We show the existence of critical transitions in the system. We apply two…

Chaotic Dynamics · Physics 2014-03-13 Jesse Berwald , Marian Gidea

Information Theory provides a fundamental basis for analysis, and for a variety of subsequent methodological approaches, in relation to uncertainty quantification. The transversal character of concepts and derived results justifies its…

Statistics Theory · Mathematics 2024-11-27 Jose M. Angulo , Francisco J. Esquivel , Ana E. Madrid , Francisco J. Alonso

Understanding the linear or nonlinear relationship between load and deformation in structural materials or structural frames is a key to a proper and a well-represented simulation. This research is dedicated to model a cyclic…

Computational Engineering, Finance, and Science · Computer Science 2020-09-29 Mirsalar Kamari , Oguz Gunes