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We present a theoretical description of the dynamics of a semi-flexible polymer being pulled through a nanopore by an external force acting at the pore. Our theory is based on the tensile blob picture of Pincus in which the front of the…

Statistical Mechanics · Physics 2015-09-16 Pui-Man Lam , Yi Zhen

We have considered the underdamped motion of a Brownian particle in the presence of a correlated external random force. The force is modeled by an Ornstein-Uhlenbeck process. We investigate the fluctuations of the work done by the external…

Statistical Mechanics · Physics 2014-11-19 Arnab Pal , Sanjib Sabhapandit

We consider edge effects in grafted polymer layers under compression. For a semi-infinite brush, the penetration depth of edge effects $\xi\propto h_0(h_0/h)^{1/2}$ is larger than the natural height $h_0$ and the actual height $h$. For a…

Soft Condensed Matter · Physics 2017-09-13 T. A. Vilgis , A. Johner , J. F. Joanny

A random field composed by Poisson distributed Brownian vortex filaments is constructed. The filament have a random thickness, length and intensity, governed by a measure $\gamma$. Under appropriate assumptions on $\gamma$ we compute the…

Probability · Mathematics 2007-05-23 Franco Flandoli , Massimiliano Gubinelli

We present a general theoretical analysis of semiflexible filaments subject to viscous drag or point forcing. These are the relevant forces in dynamic experiments designed to measure biopolymer bending moduli. By analogy with the ``Stokes…

Soft Condensed Matter · Physics 2009-10-30 Chris H. Wiggins , Daniel X. Riveline , Albrecht Ott , Raymond E. Goldstein

The properties of a semiflexible polymer with fixed ends exposed to oscillatory shear flow are investigated by simulations. The two-dimensionally confined polymer is modeled as a linear bead-spring chain, and the interaction with the fluid…

Soft Condensed Matter · Physics 2021-12-14 Antonio Lamura , Roland G. Winkler

We have studied experimentally and theoretically the response of randomly folded hyperelastic and elastoplastic sheets on the uniaxial compression loading and the statistical properties of crumpling networks. The results of these studies…

Statistical Mechanics · Physics 2008-08-26 Alexander S. Balankin , Orlando Susarrey Huerta

Based on classical statistical mechanics, we calculate analytically the length extension and the fluctuations, under a pulling force, of a polymer modelled as a freely jointed chain with extensible bonds, the latter considered as harmonic…

Statistical Mechanics · Physics 2021-10-18 Alessandro Fiasconaro , Fernando Falo

We present Monte Carlo simulations of colloidal particles pulled into grafted polymer layers by external fields. The insertion free energy of a single colloid into the polymer layer is qualitatively different for surfaces with an ordered…

Soft Condensed Matter · Physics 2012-10-17 Tine Curk , Francisco J. Martinez-Veracoechea , Daan Frenkel , Jure Dobnikar

Building on the results of our computer simulation (ArXiv cond-mat/0503573)we develop a theoretical description of the motion of a bead, embedded in a network of semiflexible polymers, and responding to an applied force. The theory reveals…

Soft Condensed Matter · Physics 2013-05-29 N. Ter-Oganessian , D. A. Pink , A. Boulbitch

Large-scale collective behavior in suspensions of many particles can be understood from the balance of statistical forces emerging beyond the direct microscopic particle interactions. Here we review some aspects of the collective forces…

Statistical Mechanics · Physics 2020-10-19 Thomas Speck

It has been revealed by mean-field theories and computer simulations that the nature of the collapse transition of a polymer is influenced by its bending stiffness $\epsilon_{\rm b}$. In two dimensions, a recent analytical work demonstrated…

Soft Condensed Matter · Physics 2009-11-13 Jie Zhou , Zhong-Can Ou-Yang , Haijun Zhou

Entropy production is the hallmark of nonequilibrium physics, quantifying irreversibility, dissipation, and the efficiency of energy transduction processes. Despite many efforts, its measurement at the nanoscale remains challenging. We…

Biological Physics · Physics 2024-03-29 I. Di Terlizzi , M. Gironella , D. Herraez-Aguilar , T. Betz , F. Monroy , M. Baiesi , F. Ritort

Topological entanglements in polymers are mimicked by sliding rings (slip-links) which enforce pair contacts between monomers. We study the force-extension curve for linear polymers in which slip-links create additional loops of variable…

Statistical Mechanics · Physics 2009-11-07 Ralf Metzler , Yacov Kantor , Mehran Kardar

The forces that mixtures of motorized and passive crosslinking proteins collectively generate between cytoskeletal filaments within our cells are the key drivers of active cellular mechanics. Despite their importance, a unified theory to…

Soft Condensed Matter · Physics 2026-02-23 Cedrik Barutel , Sebastian Fürthauer

We investigate the nonequilibrium steady-state thermodynamics of single Brownian macromolecules with inertia under feedback control in isothermal ambient fluid. With the control being represented by a velocity-dependent external force, we…

Classical Physics · Physics 2007-05-23 Kyung Hyuk Kim , Hong Qian

We study analytically a model of a two dimensional, partially directed, flexible or semiflexible polymer, attached to an attractive wall which is perpendicular to the preferred direction. In addition, the polymer is stretched by an…

Statistical Mechanics · Physics 2015-05-13 Pui-Man Lam , Yi Zhen , Haijun Zhou , Jie Zhou

We use analytical calculations and Monte Carlo simulations to determine the thermal fluctuation spectrum of a membrane patch of a few tens of nanometer in size, whose corners are located at a fixed distance $d$ above a plane rigid surface.…

Soft Condensed Matter · Physics 2009-11-13 Oded Farago

When birds come together to form a flock, the distribution of their individual velocities narrows around the mean velocity of the flock. We argue that, in a broad class of models for the joint distribution of positions and velocities, this…

Statistical Mechanics · Physics 2016-06-01 Michele Castellana , William Bialek , Andrea Cavagna , Irene Giardina

We analyze static properties of a strongly confined semiflexible polymer, i.e. either trapped in a closed space or compressed by external forces, in an athermal solvent. Like a flexible polymer case, we can resort to an analogy with the…

Soft Condensed Matter · Physics 2009-11-13 Takahiro Sakaue