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Biological systems exhibit two structural features on many levels of organization: sparseness, in which only a small fraction of possible interactions between components actually occur; and modularity - the near decomposability of the…

Molecular Networks · Quantitative Biology 2013-12-25 Tamar Friedlander , Avraham E. Mayo , Tsvi Tlusty , Uri Alon

In this paper we investigate the normal and the large fluctuations of additive functionals associated with a stochastic process under a general non-Poissonian resetting mechanism. Cumulative functionals of regenerative processes are very…

Probability · Mathematics 2023-04-24 Marco Zamparo

In this letter we examine a model recently proposed to produce phase synchronization [K. Wood et al, Phys. Rev. Lett. 96, 145701 (2006)] and we show that the onset to synchronization corresponds to the emergence of an intermittent process…

Statistical Mechanics · Physics 2007-05-23 Simone Bianco , Elvis Geneston , Paolo Grigolini , Massimiliano Ignaccolo

We investigate large deviations for the empirical measure of the forward and backward recurrence time processes associated with a classical renewal process with arbitrary waiting-time distribution. The Donsker-Varadhan theory cannot be…

Probability · Mathematics 2010-09-22 Raphael Lefevere , Mauro Mariani , Lorenzo Zambotti

We present and establish large deviations principles for general multivariate renewal-reward processes associated with a classical discrete-time renewal process. A renewal-reward process describes a cumulative reward over time, supposing…

Mathematical Physics · Physics 2019-04-11 Marco Zamparo

Aging is a ubiquitous relaxation dynamic in disordered materials. It ensues after a rapid quench from an equilibrium "fluid" state into a non-equilibrium, history-dependent jammed state. We propose a physically motivated description that…

Soft Condensed Matter · Physics 2018-08-29 Stefan Boettcher , Dominic M. Robe , Paolo Sibani

Time-dependent correlation functions of (unstable) particles undergoing biased or unbiased diffusion, coagulation and annihilation are calculated. This is achieved by similarity transformations between different stochastic models and…

Condensed Matter · Physics 2009-10-28 Malte Henkel , Enzo Orlandini , Gunter M. Schütz

The recurrence times between extreme events have been the central point of statistical analyses in many different areas of science. Simultaneously, the Poincar\'e recurrence time has been extensively used to characterize nonlinear dynamical…

Data Analysis, Statistics and Probability · Physics 2007-05-23 Eduardo G. Altmann , Holger Kantz

Mutations can arise from the chance misincorporation of nucleotides during DNA replication or from DNA lesions that are not repaired correctly. We introduce a model that relates the source of mutations to their accumulation with cell…

Populations and Evolution · Quantitative Biology 2015-07-27 Ziyue Gao , Minyoung J. Wyman , Guy Sella , Molly Przeworski

Aging, the process of growing old or maturing, is one of the most widely seen natural phenomena in the world. For the stochastic processes, sometimes the influence of aging can not be ignored. For example, in this paper, by analyzing the…

Chemical Physics · Physics 2017-11-30 Wanli Wang , Weihua Deng

In this paper, we review the general features of the out-of-equilibrium dynamics of spin glasses. We use this example as a guideline for a brief description of glassy dynamics in other disordered systems like structural and polymer glasses,…

Disordered Systems and Neural Networks · Physics 2009-11-03 Eric Vincent

We study the off-equilibrium dynamics of a particle in a general $N$-dimensional random potential when $N \to \infty$. We demonstrate the existence of two asymptotic time regimes: {\it i.} stationary dynamics, {\it ii.} slow aging dynamics…

Condensed Matter · Physics 2009-10-28 Leticia F. Cugliandolo , Pierre Le Doussal

We analyze the citation time-series of manuscripts in three different fields of science; physics, social science and technology. The evolution of the time-series of the yearly number of citations, namely the citation trajectories, diffuse…

Digital Libraries · Computer Science 2021-09-21 Maryam Zamani , Erez Aghion , Peter Pollner , Tamas Vicsek , Holger Kantz

There exist important stochastic physical processes involving infinite mean waiting times. The mean divergence has dramatic consequences on the process dynamics. Fractal time random walks, a diffusion process, and subrecoil laser cooling, a…

Disordered Systems and Neural Networks · Physics 2015-06-24 F. Bardou

An interesting concept that has been underexplored in the context of time-dependent simulations is the correlation of total magnetization, $C(t)$%. One of its main advantages over directly studying magnetization is that we do not need to…

Statistical Mechanics · Physics 2023-10-09 Roberto da Silva , Tânia Tomé , Mário José de Oliveira

There are two main quantities involved in the deviation of a stochastic process from a Poisson process: the squared coefficient of variation of the time intervals between adjacent events and the Fano factor of the number of reaction events.…

Statistical Mechanics · Physics 2023-11-02 Seong Jun Park , M. Y. Choi

Renewal processes are broadly used to model stochastic behavior consisting of isolated events separated by periods of quiescence, whose durations are specified by a given probability law. Here, we identify the minimal sufficient statistic…

Statistical Mechanics · Physics 2023-07-19 Sarah Marzen , James P. Crutchfield

We introduce a single generative mechanism with which it is able to describe diverse non-stationary diffusions. A non-stationary Markovian replication process for steps is considered, for which we analytically derive time-evolution of the…

Statistical Mechanics · Physics 2017-10-25 Yichul Choi , Hyun-Joo Kim

Quantum transport of electrons through a molecule is a series of individual electron tunnelling events separated by stochastic waiting time intervals. We study the emergence of temporal correlations between successive waiting times for the…

Mesoscale and Nanoscale Physics · Physics 2017-09-19 Daniel S. Kosov

We use state-of-the-art molecular dynamics simulations to study the effects of annealed disorder on the phase separating kinetics and aging phenomena of a segregating binary fluid mixture. In the presence of disorder, we observe a dramatic…

Soft Condensed Matter · Physics 2021-12-01 Rounak Bhattacharyya , Bhaskar Sen Gupta