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We develop an immersed-boundary approach to modeling reaction-diffusion processes in dispersions of reactive spherical particles, from the diffusion-limited to the reaction-limited setting. We represent each reactive particle with a…

Numerical Analysis · Mathematics 2015-06-16 A. Pal Singh Bhalla , B. E. Griffith , N. A. Patankar , A. Donev

Diffusion through semipermeable interfaces has a wide range of applications, ranging from molecular transport through biological membranes to reverse osmosis for water purification using artificial membranes. At the single-particle level,…

Statistical Mechanics · Physics 2023-01-25 Paul C Bressloff

Anomalous diffusion often arises in complex environments where viscoelastic or crowded conditions influence particle motion. In many biological and soft-matter systems, distinct components of the medium exhibit unique viscoelastic…

Soft Condensed Matter · Physics 2026-01-05 Chan Lim , Jae-Hyung Jeon

Diffusion models (DMs) have emerged as powerful generative models for solving inverse problems, offering a good approximation of prior distributions of real-world image data. Typically, diffusion models rely on large-scale clean signals to…

Computer Vision and Pattern Recognition · Computer Science 2024-07-17 Yifei Wang , Weimin Bai , Weijian Luo , Wenzheng Chen , He Sun

Anomaly detection, the technique of identifying abnormal samples using only normal samples, has attracted widespread interest in industry. Existing one-model-per-category methods often struggle with limited generalization capabilities due…

Computer Vision and Pattern Recognition · Computer Science 2024-07-03 Jiawei Zhan , Jinxiang Lai , Bin-Bin Gao , Jun Liu , Xiaochen Chen , Chengjie Wang

In this work, we report a new method to simulate active Brownian particles (ABPs) in molecular dynamics (MD) simulations. Immersed in a fluid, each ABP consists of a head particle and a spherical phantom region of fluid where the flagellum…

Soft Condensed Matter · Physics 2019-02-15 Liya Wang , Xinpeng Xu , Zhigang Li , Tiezheng Qian

Nuclear magnetic resonance (NMR) diffusion experiments are widely employed as they yield information about structures hindering the diffusion process, e.g. about cell membranes. While it has been shown in recent articles, that these…

Medical Physics · Physics 2013-05-08 Frederik Bernd Laun , Tristan Anselm Kuder

We introduce a simulation strategy to consistently couple continuum biomembrane dynamics to the motion of discrete biological macromolecules residing within or on the membrane. The methodology is used to study the diffusion of integral…

Soft Condensed Matter · Physics 2009-05-26 Ali Naji , Paul J. Atzberger , Frank L. H. Brown

In this manuscript we demonstrate a method to reconstruct the wavefront of focused beams from a measured diffraction pattern behind a diffracting mask in real-time. The phase problem is solved by means of a neural network, which is trained…

Image and Video Processing · Electrical Eng. & Systems 2021-04-07 Jonathon White , Sici Wang , Wilhelm Eschen , Jan Rothhardt

We report high time-resolution measurements of photon statistics from pairs of dye molecules coupled by fluorescence resonance energy transfer (FRET). In addition to quantum-optical photon antibunching, we observe photon bunching on a…

Condensed Matter · Physics 2009-11-07 Andrew J. Berglund , Andrew C. Doherty , Hideo Mabuchi

We develop a closed-form analytical theory for the transport of a chiral active Brownian particle (cABP) in three dimensions, moving through a fluctuating local density field that coarse-grains steric and dynamical interactions in a dense…

Statistical Mechanics · Physics 2025-08-25 Jayam Joshi , Shradha Mishra

The active Brownian particle (ABP) model describes a swimmer, synthetic or living, whose direction of swimming is a Brownian motion. The swimming is due to a propulsion force, and the fluctuations are typically thermal in origin. We present…

Soft Condensed Matter · Physics 2022-07-18 Jean-Luc Thiffeault , Jiajia Guo

In this paper the use of nonlinear cross-diffu\-sion systems to model image restoration is investigated, theoretically and numerically. In the first case, well-posedness, scale-space properties and long time behaviour are analyzed. From a…

Analysis of PDEs · Mathematics 2017-02-21 A. Araújo , S. Barbeiro , E. Cuesta , A. Durán

The application of powder diffraction methods in two-dimensional crystallography is regarded as intractable because of the uncertainties associated with overlapping reflections. Here, we report an approach that resolves these ambiguities…

We map the problem of diffusion in the quenched trap model onto a new stochastic process: Brownian motion which is terminated at the coverage "time" ${\cal S}_\alpha=\sum_{x=-\infty} ^\infty (n_x)^\alpha$ with $n_x$ being the number of…

Statistical Mechanics · Physics 2015-06-05 Stas Burov , Eli Barkai

A major open problem in biophysics is to understand the highly heterogeneous transport of many structures inside living cells, such as endosomes. We find that mathematically it is described by spatio-temporal heterogeneous fractional…

Subcellular Processes · Quantitative Biology 2021-07-20 Nickolay Korabel , Daniel Han , Alessandro Taloni , Gianni Pagnini , Sergei Fedotov , Viki Allan , Thomas Andrew Waigh

We study the relaxation of a Brownian particle with long range memory under confinement in one dimension. The particle diffuses in an arbitrary confining potential and resets at random times to previously visited positions, chosen with a…

Statistical Mechanics · Physics 2025-07-15 Denis Boyer , Satya N. Majumdar

Fast radio bursts (FRBs) are brief, luminous pulses with unknown physical origin. The repetition pattern of FRBs contains essential information about their physical nature and emission mechanisms. Using the two largest samples of FRB…

High Energy Astrophysical Phenomena · Physics 2023-06-14 F. Y. Wang , Q. Wu , Z. G. Dai

In this work, we investigate the recovery of a parameter in a diffusion process given by the order of derivation in time for a class of diffusion type equations, including both classical and time-fractional diffusion equations, from the…

Analysis of PDEs · Mathematics 2021-11-04 Bangti Jin , Yavar Kian

Einstein's explanation of Brownian motion provided one of the cornerstones which underlie the modern approaches to stochastic processes. His approach is based on a random walk picture and is valid for Markovian processes lacking long-term…

Statistical Mechanics · Physics 2009-11-10 I. M. Sokolov , J. Klafter