English

Unravelling Heterogeneous Transport of Endosomes

Subcellular Processes 2021-07-20 v1 Soft Condensed Matter

Abstract

A major open problem in biophysics is to understand the highly heterogeneous transport of many structures inside living cells, such as endosomes. We find that mathematically it is described by spatio-temporal heterogeneous fractional Brownian motion (hFBM) which is defined as FBM with a randomly switching anomalous exponent and random generalized diffusion coefficient. Using a comprehensive local analysis of a large ensemble of experimental endosome trajectories (> 10^5), we show that their motion is characterized by power-law probability distributions of displacements and displacement increments, exponential probability distributions of local anomalous exponents and power-law probability distributions of local generalized diffusion coefficients of endosomes which are crucial ingredients of spatio-temporal hFBM. The increased sensitivity of deep learning neural networks for FBM characterisation corroborates the development of this multi-fractal analysis. Our findings are an important step in understanding endosome transport. We also provide a powerful tool for studying other heterogeneous cellular processes.

Keywords

Cite

@article{arxiv.2107.07760,
  title  = {Unravelling Heterogeneous Transport of Endosomes},
  author = {Nickolay Korabel and Daniel Han and Alessandro Taloni and Gianni Pagnini and Sergei Fedotov and Viki Allan and Thomas Andrew Waigh},
  journal= {arXiv preprint arXiv:2107.07760},
  year   = {2021}
}

Comments

17 pages, 8 figures