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Many scientific-software projects test their codes inadequately, or not at all. Despite its well-known benefits, adopting routine testing is often not easy. Development teams may have doubts about establishing effective test procedures,…

Software Engineering · Computer Science 2014-11-11 Paul Madden , Eduardo G. Valente

Software products evolve over time. Sometimes they evolve by adding new features, and sometimes by either fixing bugs or replacing outdated implementations with new ones. When software engineers fail to anticipate such evolution during…

Programming Languages · Computer Science 2009-10-15 Wonseok Chae

In software development there is a constant pressure to produce code faster and faster without compromising on quality. New tools supporting developers are created in response to this demand. Currently a new generation of such solutions is…

Software Engineering · Computer Science 2023-01-13 Mateusz Jaworski , Dariusz Piotrkowski

This dissertation focuses on the development process of scientific software. It presents a methodology that has emerged over time during development of Monte Carlo tools for high energy physics experiments. A short description of the…

Software Engineering · Computer Science 2022-03-23 T. Przedzinski

Formal verification tools are often developed by experts for experts; as a result, their usability by programmers with little formal methods experience may be severely limited. In this paper, we discuss this general phenomenon with…

Software Engineering · Computer Science 2015-08-20 Carlo A. Furia , Christopher M. Poskitt , Julian Tschannen

Large language models (LLMs) have been touted to enable increased productivity in many areas of today's work life. Scientific research as an area of work is no exception: the potential of LLM-based tools to assist in the daily work of…

Software Engineering · Computer Science 2024-04-24 Mohamed Nejjar , Luca Zacharias , Fabian Stiehle , Ingo Weber

Many programmers, when they encounter an error, would like to have the benefit of automatic fix suggestions---as long as they are, most of the time, adequate. Initial research in this direction has generally limited itself to specific…

Software Engineering · Computer Science 2015-03-18 Yu Pei , Yi Wei , Carlo A. Furia , Martin Nordio , Bertrand Meyer

Almost all research work in computational neuroscience involves software. As researchers try to understand ever more complex systems, there is a continual need for software with new capabilities. Because of the wide range of questions being…

Neurons and Cognition · Quantitative Biology 2013-11-21 Marc-Oliver Gewaltig , Robert Cannon

In the field of computational science and engineering, workflows often entail the application of various software, for instance, for simulation or pre- and postprocessing. Typically, these components have to be combined in arbitrarily…

Software Engineering · Computer Science 2022-11-15 Philipp Diercks , Dennis Gläser , Ontje Lünsdorf , Michael Selzer , Bernd Flemisch , Jörg F. Unger

Modern cyber-physical systems are operated by complex software that increasingly takes over safety-critical functions. Software enables rapid iterations and continuous delivery of new functionality that meets the ever-changing expectations…

Software Engineering · Computer Science 2025-10-08 Carmen Cârlan , Daniel Ratiu , Michael Wagner

Due to non-experts also developing security relevant applications it is necessary to support them too. Some improvements in the current research may not reach or impact these developers. Nonetheless these developers use security libraries.…

Cryptography and Security · Computer Science 2016-03-24 Kai Mindermann

The prevalence of software systems has become an integral part of modern-day living. Software usage has increased significantly, leading to its growth in both size and complexity. Consequently, software development is becoming a more…

Software Engineering · Computer Science 2023-06-07 Tiago Dias , Arthur Batista , Eva Maia , Isabel Praça

Collaborative scientific authoring is increasingly being supported by software tools. Traditionally, desktop-based authoring tools had the most advanced editing features, allowed for more formatting options, and included more import/export…

Digital Libraries · Computer Science 2018-04-23 Afshin Sadeghi , Mahdi Jaberzadeh Ansari , Johannes Wilm , Christoph Lange

Small to medium-scale data science experiments often rely on research software developed ad-hoc by individual scientists or small teams. Often there is no time to make the research software fast, reusable, and open access. The consequence…

Software Engineering · Computer Science 2022-11-10 Moritz Schubotz , Ankit Satpute , Andre Greiner-Petter , Akiko Aizawa , Bela Gipp

Software is now a vital scientific instrument, providing the tools for data collection and analysis across disciplines from bioinformatics and computational physics, to the humanities. The software used in research is often home-grown and…

Software Engineering · Computer Science 2019-03-15 Mario Rosado de Souza , Robert Haines , Markel Vigo , Caroline Jay

Computational biology continues to spread into new fields, becoming more accessible to researchers trained in the wet lab who are eager to take advantage of growing datasets, falling costs, and novel assays that present new opportunities…

Other Quantitative Biology · Quantitative Biology 2024-01-09 Richard J. Abdill , Emma Talarico , Laura Grieneisen

Scientific software often presents very particular requirements regarding usability, which is often completely overlooked in this setting. As computational science has emerged as its own discipline, distinct from theoretical and…

Human-Computer Interaction · Computer Science 2017-09-05 Francisco Queiroz , Raniere Silva , Jonah Miller , Sandor Brockhauser , Hans Fangohr

The disconnect between distributed software artifacts and their supposed source code enables attackers to leverage the build process for inserting malicious functionality. Past research in this field focuses on compiled language ecosystems,…

Software Engineering · Computer Science 2025-08-13 Timo Pohl , Pavel Novák , Marc Ohm , Michael Meier

Any cutting-edge scientific research project requires a myriad of computational tools for data generation, management, analysis and visualization. Python is a flexible and extensible scientific programming platform that offered the perfect…

Quantitative Methods · Quantitative Biology 2008-03-14 Julius B. Lucks

With the increasing complexity of software systems, it becomes very difficult to install, configure, adjust, and maintain them. As systems become more interconnected and diverse, system architects are less able to predict and design the…

Software Engineering · Computer Science 2024-03-04 Zahra Yazdanparast