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Computational reproducibility of scientific results, that is, the execution of a computational experiment (e.g., a script) using its original settings (data, code, etc.), should always be possible. However, reproducibility has become a…

Human-Computer Interaction · Computer Science 2025-04-15 Lázaro Costa , Susana Barbosa , Jácome Cunha

This paper describes a set of tools for automating and controlling the development and maintenance of software systems. The mental model is a software assembly line. Program design and construction take place at individual programmer…

Software Engineering · Computer Science 2010-06-14 Martin J. McGowan , William L. Anderson

Software testing has received much attention over the last years and has reached such critical importance that agile software development practices put software testing at its core. Agile software development is successfully applied in…

Software Engineering · Computer Science 2020-10-09 Tom-Robin Teschner

Microscopes have morphed from purely optical instruments into motorized, robotic machines that form images on digital sensors rather than eyeballs. This continuing trend towards automation and digitization enables many new approaches to…

Other Quantitative Biology · Quantitative Biology 2020-05-04 Raghav Chhetri , Stephan Preibisch , Nico Stuurman

Scientific software projects evolve rapidly in their initial development phase, yet at the end of a funding period, the completion of a research project, thesis, or publication, further engagement in the project may slow down or cease…

General Literature · Computer Science 2021-05-10 Jörg Fehr , Christian Himpe , Stephan Rave , Jens Saak

Software development builds digital tools to automate processes, yet its initial phases, up to deployment, remain largely manual. There are two reasons: Development tasks are often under-specified and transitions between tasks usually…

Software Engineering · Computer Science 2025-04-15 Dhasarathy Parthasarathy , Yinan Yu , Earl T. Barr

Although computer science papers are often accompanied by software artifacts, connecting research papers to their software artifacts and vice versa is not always trivial. First of all, there is a lack of well-accepted standards for how such…

Software Engineering · Computer Science 2021-04-14 Hideaki Hata , Jin L. C. Guo , Raula Gaikovina Kula , Christoph Treude

Cloud platforms allow users to execute tasks directly from their web browser and are a key enabling technology not only for commerce but also for computational science. Research software is often developed by scientists with limited…

Modern research heavily relies on software. A significant challenge researchers face is understanding the complex software used in specific research fields. We target two scenarios in this context, namely long onboarding times for newcomers…

Software Engineering · Computer Science 2026-04-14 Adrian Bajraktari , Andreas Vogelsang

Building of tools--from simple prototypes to industrial-strength applications--is a pervasive activity in academic research. When proposing a new technique for software maintenance, effective tool support is typically required to…

Software Engineering · Computer Science 2008-08-05 Holger M. Kienle , Hausi A. Müller

Mobile devices such as smartphones and tablets have become ubiquitous in today's modern computing landscape. The applications that run on these mobile devices (often referred to as "apps") have become a primary means of computing for…

Software Engineering · Computer Science 2018-07-20 Kevin Moran

Fast numerical libraries have been a cornerstone of scientific computing for decades, but this comes at a price. Programs may be tied to vendor specific software ecosystems resulting in polluted, non-portable code. As we enter an era of…

Programming Languages · Computer Science 2019-10-10 Bruce Collie , Philip Ginsbach , Michael F. P. O'Boyle

Science advances not only through the accumulation of facts but also through the evolution of tools. Crucially, tools are rarely used in isolation. They form tool portfolios, combinations shaped by a discipline's workflows and analytical…

Digital Libraries · Computer Science 2026-04-28 Zhouming Wu , Dakota Murray

Within the growing domain of software engineering in the automotive sector, the number of used tools, processes, methods and languages has increased distinctly in the past years. To be able to choose proper methods for particular…

Software Engineering · Computer Science 2016-01-15 Florian Bock , Daniel Homm , Sebastian Siegl , Reinhard German

Conducting empirical research in software engineering industry is a process, and as such, it should be generalizable. The aim of this paper is to discuss how academic researchers may address some of the challenges they encounter during…

Software Engineering · Computer Science 2020-03-17 Katarzyna Biesialska , Xavier Franch , Victor Muntés-Mulero

WorkingWiki is a software extension for the popular MediaWiki platform that makes a wiki into a powerful environment for collaborating on publication-quality manuscripts and software projects. Developed in Jonathan Dushoff's theoretical…

Human-Computer Interaction · Computer Science 2012-12-11 Lee Worden

Are others using software you've written in their research and citing it as you want it to be cited? Software can be cited in different ways, some good, and some not good at all for tracking and counting citations in indexers such as ADS…

Instrumentation and Methods for Astrophysics · Physics 2022-12-27 Alice Allen

To refactor already working code while keeping reliability, compatibility and perhaps security, we can borrow ideas from micropass/nanopass compilers. By treating the procedure of software refactoring as composing code transformations, and…

Software Engineering · Computer Science 2023-08-15 Yu Liu

Scientific software is one of the key elements for reproducible research. However, classic publications and related scientific software are typically not (sufficiently) linked, and it lacks tools to jointly explore these artefacts. In this…

Digital Libraries · Computer Science 2018-06-21 Anett Hoppe , Jascha Hagen , Helge Holzmann , Günter Kniesel , Ralph Ewerth

Computational science relies on scientific software as its primary instrument for scientific discovery. Therefore, similar to the use of other types of scientific instruments, correct software and the correct operation of the software is…

Software Engineering · Computer Science 2024-05-20 Akash Dhruv , Rajeev Jain , Jared O'Neal , Klaus Weide , Anshu Dubey