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Designing RNA sequences that reliably adopt specified three-dimensional structures while maintaining thermodynamic stability remains challenging for synthetic biology and therapeutics. Current inverse folding approaches optimize for…

Direct Preference Optimization (DPO) has emerged as a simple and effective method for aligning large language models. However, its reliance on a fixed temperature parameter leads to suboptimal training on diverse preference data, causing…

Machine Learning · Computer Science 2025-10-08 Hyung Gyu Rho

Diffusion Models have revolutionized the field of human motion generation by offering exceptional generation quality and fine-grained controllability through natural language conditioning. Their inherent stochasticity, that is the ability…

Computer Vision and Pattern Recognition · Computer Science 2024-05-08 Massimiliano Pappa , Luca Collorone , Giovanni Ficarra , Indro Spinelli , Fabio Galasso

Post-training of LLMs with RLHF, and subsequently preference optimization algorithms such as DPO, IPO, etc., made a big difference in improving human alignment. However, all such techniques can only work with a single (human) objective. In…

Machine Learning · Computer Science 2025-05-19 Akhil Agnihotri , Rahul Jain , Deepak Ramachandran , Zheng Wen

Aligning large language models (LLMs) with human values is an increasingly critical step in post-training. Direct Preference Optimization (DPO) has emerged as a simple, yet effective alternative to reinforcement learning from human feedback…

Artificial Intelligence · Computer Science 2025-07-29 Yifan Wang , Runjin Chen , Bolian Li , David Cho , Yihe Deng , Ruqi Zhang , Tianlong Chen , Zhangyang Wang , Ananth Grama , Junyuan Hong

Direct Preference Optimization (DPO) is an effective approach for aligning protein language models with experimental design goals. However, DPO faces a scalability bottleneck: the number of possible training pairs grows quadratically with…

Machine Learning · Computer Science 2025-11-27 Constance Ferragu , Jonathan D. Ziegler , Nicolas Deutschmann , Arthur Lindoulsi , Eli Bixby , Cradle ML Team

Large Vision-Language Models (LVLMs) hold immense potential for complex multimodal instruction following, yet their development is often hindered by the high cost and inconsistency of human annotation required for effective fine-tuning and…

Computation and Language · Computer Science 2025-08-19 Ruirui Gao , Emily Johnson , Bowen Tan , Yanfei Qian

Direct Preference Optimization (DPO) has gained significant attention for its simplicity and computational efficiency in aligning large language models (LLMs). Recent advancements have extended DPO to multimodal scenarios, achieving strong…

Computation and Language · Computer Science 2025-05-27 Yeyuan Wang , Dehong Gao , Rujiao Long , Lei Yi , Linbo Jin , Libin Yang , Xiaoyan Cai

The inverse folding problem, aiming to design amino acid sequences that fold into desired three-dimensional structures, is pivotal for various biotechnological applications. Here, we introduce a novel approach leveraging Direct Preference…

Machine Learning · Computer Science 2025-06-04 Junde Xu , Zijun Gao , Xinyi Zhou , Jie Hu , Xingyi Cheng , Le Song , Guangyong Chen , Pheng-Ann Heng , Jiezhong Qiu

Direct Preference Optimization (DPO) is widely used after supervised fine-tuning (SFT) to align language models, yet empirical behavior under small backbones and modest data is under-specified. We systematically compare SFT-only, DPO-only,…

Computation and Language · Computer Science 2026-03-23 Yuming Feng , Christy Yang

Large Language Models (LLMs) have demonstrated remarkable potential in automating software development tasks. While recent advances leverage Supervised Fine-Tuning (SFT) and Direct Preference Optimization (DPO) to align models with human…

Software Engineering · Computer Science 2025-12-09 Xin Yin , Chao Ni , Xiaohu Yang

Preference optimization has become a central paradigm for aligning large language models with human feedback. Direct Preference Optimization (DPO) simplifies reinforcement learning from human feedback by directly optimizing pairwise…

Machine Learning · Computer Science 2026-05-05 Inoussa Mouiche

Multi-Objective Alignment (MOA) aims to align LLMs' responses with multiple human preference objectives, with Direct Preference Optimization (DPO) emerging as a prominent approach. However, we find that DPO-based MOA approaches suffer from…

Machine Learning · Computer Science 2025-12-09 Moxin Li , Yuantao Zhang , Wenjie Wang , Wentao Shi , Zhuo Liu , Fuli Feng , Tat-Seng Chua

Multi-subject personalized image generation aims to synthesize customized images containing multiple specified subjects without requiring test-time optimization. However, achieving fine-grained independent control over multiple subjects…

Computer Vision and Pattern Recognition · Computer Science 2025-09-03 Qiaoqiao Jin , Siming Fu , Dong She , Weinan Jia , Hualiang Wang , Mu Liu , Jidong Jiang

Designing therapeutic messenger RNA (mRNA) requires creating full-length transcripts that carefully balance stability, translation efficiency, and immune safety. To address this challenge, we propose ProMORNA, a multi-objective generation…

Machine Learning · Computer Science 2026-05-05 Zixi Shao , Tao Wang , Yibei Xiao , Tianyi Huang

DPO is an effective preference optimization algorithm. However, the DPO-tuned models tend to overfit on the dispreferred samples, manifested as overly long generations lacking diversity. While recent regularization approaches have…

Computation and Language · Computer Science 2025-08-26 Chenxu Yang , Ruipeng Jia , Naibin Gu , Zheng Lin , Siyuan Chen , Chao Pang , Weichong Yin , Yu Sun , Hua Wu , Weiping Wang

Radiography Report Generation (RRG) has gained significant attention in medical image analysis as a promising tool for alleviating the growing workload of radiologists. However, despite numerous advancements, existing methods have yet to…

Computer Vision and Pattern Recognition · Computer Science 2025-09-29 Valentin Samokhin , Boris Shirokikh , Mikhail Goncharov , Dmitriy Umerenkov , Maksim Bobrin , Ivan Oseledets , Dmitry Dylov , Mikhail Belyaev

Inverse folding models play an important role in structure-based design by predicting amino acid sequences that fold into desired reference structures. Models like ProteinMPNN, a message-passing encoder-decoder model, are trained to…

Machine Learning · Computer Science 2026-05-12 Ryan Park , Darren J. Hsu , C. Brian Roland , Maria Korshunova , Chen Tessler , Shie Mannor , Olivia Viessmann , Bruno Trentini

We present a multi-objective binder design paradigm based on instruction fine-tuning and direct preference optimization (DPO) of autoregressive protein language models (pLMs). Multiple design objectives are encoded in the language model…

Biological Physics · Physics 2024-03-08 Pouria Mistani , Venkatesh Mysore

Code generation models have shown significant potential for automating programming tasks. However, the challenge of generating accurate and reliable code persists due to the highly complex and long-reasoning nature of the task. Even…

Software Engineering · Computer Science 2025-06-04 Kechi Zhang , Ge Li , Jia Li , Yihong Dong , Jia Li , Zhi Jin
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