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Structure-based drug design (SBDD) focuses on designing small-molecule ligands that bind to specific protein pockets. Computational methods are integral in modern SBDD workflows and often make use of virtual screening methods via docking or…

Machine Learning · Computer Science 2025-12-05 Ian Dunn , Liv Toft , Tyler Katz , Juhi Gupta , Riya Shah , Ramith Hettiarachchi , David R. Koes

Diffusion policies excel at learning complex action distributions for robotic visuomotor tasks, yet their iterative denoising process poses a major bottleneck for real-time deployment. Existing acceleration methods apply a fixed number of…

Robotics · Computer Science 2025-08-12 Shu-Ang Yu , Feng Gao , Yi Wu , Chao Yu , Yu Wang

The design of target-specific molecules such as small molecules, peptides, and antibodies is vital for biological research and drug discovery. Existing generative methods are restricted to single-domain molecules, failing to address…

Machine Learning · Computer Science 2025-05-27 Xiangzhe Kong , Zishen Zhang , Ziting Zhang , Rui Jiao , Jianzhu Ma , Wenbing Huang , Kai Liu , Yang Liu

Diffusion policies excel at robotic manipulation by naturally modeling multimodal action distributions in high-dimensional spaces. Nevertheless, diffusion policies suffer from diffusion representation collapse: semantically similar…

Artificial Intelligence · Computer Science 2026-04-23 Guowei Zou , Weibing Li , Hejun Wu , Yukun Qian , Yuhang Wang , Haitao Wang

Discrete diffusion models have recently gained significant attention due to their ability to process complex discrete structures for language modeling. However, fine-tuning these models with policy gradient methods, as is commonly done in…

Machine Learning · Statistics 2025-12-19 Oussama Zekri , Nicolas Boullé

We address the problem of fine-tuning diffusion models for reward-guided generation in biomolecular design. While diffusion models have proven highly effective in modeling complex, high-dimensional data distributions, real-world…

SDE-based methods such as denoising diffusion probabilistic models (DDPMs) have shown remarkable success in real-world sample generation tasks. Prior analyses of DDPMs have been focused on the exponential Euler discretization, showing…

Machine Learning · Computer Science 2025-11-10 Matthew S. Zhang , Stephen Huan , Jerry Huang , Nicholas M. Boffi , Sitan Chen , Sinho Chewi

Fine-tuning a pre-trained generative model has demonstrated good performance in generating promising drug molecules. The fine-tuning task is often formulated as a reinforcement learning problem, where previous methods efficiently learn to…

Machine Learning · Computer Science 2025-11-12 Hampus Gummesson Svensson , Christian Tyrchan , Ola Engkvist , Morteza Haghir Chehreghani

Diffusion models have shown remarkable success in text-to-image generation, making preference alignment for these models increasingly important. The preference labels are typically available only at the terminal of denoising trajectories,…

Computer Vision and Pattern Recognition · Computer Science 2025-03-14 Dingyuan Shi , Yong Wang , Hangyu Li , Xiangxiang Chu

Recent advancements in structure-based drug design (SBDD) have significantly enhanced the efficiency and precision of drug discovery by generating molecules tailored to bind specific protein pockets. Despite these technological strides,…

Biomolecules · Quantitative Biology 2024-06-14 Bowen Gao , Haichuan Tan , Yanwen Huang , Minsi Ren , Xiao Huang , Wei-Ying Ma , Ya-Qin Zhang , Yanyan Lan

Reinforcement learning (RL) has shown extraordinary potential in aligning diffusion models to downstream tasks, yet most of them still suffer from significant reward hacking, which degrades generative diversity and quality by inducing…

Machine Learning · Computer Science 2026-05-14 Jiaming Li , Chenyu Zhu , Nanxi Yi , Youjun Bao , Li Sun , Quanying Lv , Xiang Fang , Daizong Liu , Jianjun Li , Kun He , Bowen Zhou , Zhiyuan Ma

Diffusion models can be improved with additional guidance towards more effective representations of input. Indeed, prior empirical work has already shown that aligning internal representations of the diffusion model with those of…

Machine Learning · Computer Science 2025-10-14 Chenyu Wang , Cai Zhou , Sharut Gupta , Zongyu Lin , Stefanie Jegelka , Stephen Bates , Tommi Jaakkola

Acquiring high-quality Positron Emission Tomography (PET) images requires administering high-dose radiotracers, which increases radiation exposure risks. Generating standard-dose PET (SPET) from low-dose PET (LPET) has become a potential…

Image and Video Processing · Electrical Eng. & Systems 2025-06-24 Xiaolong Niu , Zanting Ye , Xu Han , Yanchao Huang , Hao Sun , Hubing Wu , Lijun Lu

Efficient data replication in decentralized storage systems must account for diverse policies, especially in multi-organizational, data-intensive environments. This work proposes PSMOA, a novel Policy Support Multi-objective Optimization…

Networking and Internet Architecture · Computer Science 2025-05-22 Xi Wang , Susmit Shannigrahi

De novo molecular design has facilitated the exploration of large chemical space to accelerate drug discovery. Structure-based de novo method can overcome the data scarcity of active ligands by incorporating drug-target interaction into…

Biomolecules · Quantitative Biology 2022-09-16 Yaqin Li , Lingli Li , Yongjin Xu , Yi Yu

Humanoid loco-manipulation requires coordinated high-level motion plans with stable, low-level whole-body execution under complex robot-environment dynamics and long-horizon tasks. While diffusion policies (DPs) show promise for learning…

In this study, we propose Shortcut Fine-Tuning (SFT), a new approach for addressing the challenge of fast sampling of pretrained Denoising Diffusion Probabilistic Models (DDPMs). SFT advocates for the fine-tuning of DDPM samplers through…

Machine Learning · Computer Science 2024-09-23 Ying Fan , Kangwook Lee

Normative modeling estimates reference distributions of biological measures conditional on covariates, enabling centiles and clinically interpretable deviation scores to be derived. Most neuroimaging pipelines fit one model per…

Machine Learning · Computer Science 2026-02-06 Luke Whitbread , Lyle J. Palmer , Mark Jenkinson

While foundation models demonstrate impressive performance across various tasks, they remain vulnerable to adversarial inputs. Current research explores various approaches to enhance model robustness, with Diffusion Denoised Smoothing…

Machine Learning · Computer Science 2025-05-22 Yury Belousov , Brian Pulfer , Vitaliy Kinakh , Slava Voloshynovskiy

Reinforcement learning algorithms require a large amount of samples; this often limits their real-world applications on even simple tasks. Such a challenge is more outstanding in multi-agent tasks, as each step of operation is more costly…

Machine Learning · Computer Science 2022-09-05 Yali Du , Chengdong Ma , Yuchen Liu , Runji Lin , Hao Dong , Jun Wang , Yaodong Yang
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