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Designing 3D ligands within a target binding site is a fundamental task in drug discovery. Existing structured-based drug design methods treat all ligand atoms equally, which ignores different roles of atoms in the ligand for drug design…

Biomolecules · Quantitative Biology 2024-03-14 Jiaqi Guan , Xiangxin Zhou , Yuwei Yang , Yu Bao , Jian Peng , Jianzhu Ma , Qiang Liu , Liang Wang , Quanquan Gu

Reinforcement Learning (RL) has emerged as a central paradigm for advancing Large Language Models (LLMs), where pre-training and RL post-training share the same log-likelihood formulation. In contrast, recent RL approaches for diffusion…

Machine Learning · Computer Science 2025-09-30 Shuchen Xue , Chongjian Ge , Shilong Zhang , Yichen Li , Zhi-Ming Ma

Diffusion models have seen rapid adoption in robotic imitation learning, enabling autonomous execution of complex dexterous tasks. However, action synthesis is often slow, requiring many steps of iterative denoising, limiting the extent to…

Robotics · Computer Science 2024-10-14 Sigmund H. Høeg , Yilun Du , Olav Egeland

Diffusion models have been widely employed in the field of 3D manipulation due to their efficient capability to learn distributions, allowing for precise prediction of action trajectories. However, diffusion models typically rely on large…

Randomized smoothing is a well-established method for achieving certified robustness against l2-adversarial perturbations. By incorporating a denoiser before the base classifier, pretrained classifiers can be seamlessly integrated into…

Machine Learning · Computer Science 2025-09-16 Ali Hedayatnia , Mostafa Tavassolipour , Babak Nadjar Araabi , Abdol-Hossein Vahabie

Direct Preference Optimization (DPO) is successful for alignment in LLMs but still faces challenges in text-to-image generation. Existing studies are confined to denoising diffusion models while overlooking flow-matching, and suffer from an…

Computer Vision and Pattern Recognition · Computer Science 2026-05-21 Kesong Li , Yixuan Xu , Kuo-kun Tseng , Weiyi Lu , Kan Liu , Tao Lan

Generating visually appealing images is fundamental to modern text-to-image generation models. A potential solution to better aesthetics is direct preference optimization (DPO), which has been applied to diffusion models to improve general…

Computer Vision and Pattern Recognition · Computer Science 2025-03-26 Zhanhao Liang , Yuhui Yuan , Shuyang Gu , Bohan Chen , Tiankai Hang , Mingxi Cheng , Ji Li , Liang Zheng

Direct Preference Optimization (DPO) has recently been applied as a post-training technique for text-to-video diffusion models. To obtain training data, annotators are asked to provide preferences between two videos generated from…

Computer Vision and Pattern Recognition · Computer Science 2025-10-13 Ziyi Wu , Anil Kag , Ivan Skorokhodov , Willi Menapace , Ashkan Mirzaei , Igor Gilitschenski , Sergey Tulyakov , Aliaksandr Siarohin

Diffusion models have achieved remarkable success in generating realistic and versatile images from text prompts. Inspired by the recent advancements of language models, there is an increasing interest in further improving the models by…

Computer Vision and Pattern Recognition · Computer Science 2025-10-07 Binxu Li , Minkai Xu , Jiaqi Han , Meihua Dang , Stefano Ermon

This tutorial provides a comprehensive survey of methods for fine-tuning diffusion models to optimize downstream reward functions. While diffusion models are widely known to provide excellent generative modeling capability, practical…

Machine Learning · Computer Science 2024-07-19 Masatoshi Uehara , Yulai Zhao , Tommaso Biancalani , Sergey Levine

LoRA-MoE has emerged as an effective paradigm for parameter-efficient fine-tuning, combining the low training cost of LoRA with the increased adaptation capacity of Mixture-of-Experts (MoE). However, existing LoRA-MoE frameworks typically…

Machine Learning · Computer Science 2026-04-30 Weihang Li , Jianchun Liu , Hongli Xu

Diffusion Probabilistic Models stand as a critical tool in generative modelling, enabling the generation of complex data distributions. This family of generative models yields record-breaking performance in tasks such as image synthesis,…

The dynamic nature of proteins, influenced by ligand interactions, is essential for comprehending protein function and progressing drug discovery. Traditional structure-based drug design (SBDD) approaches typically target binding sites with…

Biomolecules · Quantitative Biology 2025-03-07 Xiangxin Zhou , Yi Xiao , Haowei Lin , Xinheng He , Jiaqi Guan , Yang Wang , Qiang Liu , Feng Zhou , Liang Wang , Jianzhu Ma

Deep learning-based approaches for generating novel drug molecules with specific properties have gained a lot of interest in the last few years. Recent studies have demonstrated promising performance for string-based generation of novel…

Biomolecules · Quantitative Biology 2025-02-18 Hampus Gummesson Svensson , Christian Tyrchan , Ola Engkvist , Morteza Haghir Chehreghani

Diffusion large language models are a compelling alternative to autoregressive models, yet existing RL methods for diffusion treat all denoising steps as equally important and rely on biased, high-variance likelihood estimates. We identify…

Diffusion policies are a powerful paradigm for robotic control, but fine-tuning them with human preferences is fundamentally challenged by the multi-step structure of the denoising process. To overcome this, we introduce a Unified Markov…

Robotics · Computer Science 2026-02-03 Amitesh Vatsa , Zhixian Xie , Wanxin Jin

In Multi-agent Reinforcement Learning (MARL), accurately perceiving opponents' strategies is essential for both cooperative and adversarial contexts, particularly within dynamic environments. While Proximal Policy Optimization (PPO) and…

Artificial Intelligence · Computer Science 2024-06-11 Mohidul Haque Mridul , Mohammad Foysal Khan , Redwan Ahmed Rizvee , Md Mosaddek Khan

Diffusion models have emerged as a powerful class of generative models for molecular design, capable of capturing complex structural distributions and achieving high fidelity in 3D molecule generation. However, their widespread use remains…

Machine Learning · Computer Science 2026-01-15 Adrita Das , Peiran Jiang , Dantong Zhu , Barnabas Poczos , Jose Lugo-Martinez

Reinforcement learning has significantly enhanced the reasoning capabilities of Large Language Models (LLMs) in complex problem-solving tasks. Recently, the introduction of DeepSeek R1 has inspired a surge of interest in leveraging…

Machine Learning · Computer Science 2025-08-07 Jinghang Han , Jiawei Chen , Hang Shao , Hao Ma , Mingcheng Li , Xintian Shen , Lihao Zheng , Wei Chen , Tao Wei , Lihua Zhang

Single-cell RNA-seq profiles are high-dimensional, sparse, and unordered, causing autoregressive generation to impose an artificial ordering bias and suffer from error accumulation. To address this, we propose scDiVa, a masked discrete…

Machine Learning · Computer Science 2026-02-04 Mingxuan Wang , Cheng Chen , Gaoyang Jiang , Zijia Ren , Chuangxin Zhao , Lu Shi , Yanbiao Ma