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The heterogeneity of neurological conditions, ranging from structural anomalies to functional impairments, presents a significant challenge in medical imaging analysis tasks. Moreover, the limited availability of well-annotated datasets…

Image and Video Processing · Electrical Eng. & Systems 2024-07-15 Yang Ma , Dongang Wang , Peilin Liu , Lynette Masters , Michael Barnett , Weidong Cai , Chenyu Wang

Understanding the operation of biological and artificial networks remains a difficult and important challenge. To identify general principles, researchers are increasingly interested in surveying large collections of networks that are…

Machine Learning · Statistics 2022-01-14 Alex H. Williams , Erin Kunz , Simon Kornblith , Scott W. Linderman

Decoding visual representations from brain signals has attracted significant attention in both neuroscience and artificial intelligence. However, the degree to which brain signals truly encode visual information remains unclear. Current…

Computer Vision and Pattern Recognition · Computer Science 2026-02-10 Jiawen Zheng , Haonan Jia , Ming Li , Yuhui Zheng , Yufeng Zeng , Yang Gao , Chen Liang

The functional and structural representation of the brain as a complex network is marked by the fact that the comparison of noisy and intrinsically correlated high-dimensional structures between experimental conditions or groups shuns…

Neurons and Cognition · Quantitative Biology 2013-10-25 Tommaso Furlanello , Marco Cristoforetti , Cesare Furlanello , Giuseppe Jurman

Visual neural decoding seeks to reconstruct or infer perceived visual stimuli from brain activity patterns, providing critical insights into human cognition and enabling transformative applications in brain-computer interfaces and…

Computer Vision and Pattern Recognition · Computer Science 2025-11-11 Wenjiang Zhang , Sifeng Wang , Yuwei Su , Xinyu Li , Chen Zhang , Suyu Zhong

The development of algorithms to accurately decode neural information has long been a research focus in the field of neuroscience. Brain decoding typically involves training machine learning models to map neural data onto a preestablished…

Decoding behavior, perception, or cognitive state directly from neural signals has applications in brain-computer interface research as well as implications for systems neuroscience. In the last decade, deep learning has become the…

Neurons and Cognition · Quantitative Biology 2020-05-21 Jesse A. Livezey , Joshua I. Glaser

Artificial and biological agents cannon learn given completely random and unstructured data. The structure of data is encoded in the metric relationships between data points. In the context of neural networks, neuronal activity within a…

Machine Learning · Computer Science 2022-11-03 Kosio Beshkov , Jonas Verhellen , Mikkel Elle Lepperød

Previous brain decoding research primarily involves single-subject studies, reconstructing stimuli via fMRI activity from the same subject. Our study aims to introduce a generalization technique for cross-subject brain decoding, facilitated…

Neurons and Cognition · Quantitative Biology 2023-09-06 Matteo Ferrante , Tommaso Boccato , Nicola Toschi

Foundation models have shown remarkable success in fitting biological visual systems; however, their black-box nature inherently limits their utility for understanding brain function. Here, we peek inside a SOTA foundation model of neural…

Neurons and Cognition · Quantitative Biology 2025-12-10 Johannes Bertram , Luciano Dyballa , T. Anderson Keller , Savik Kinger , Steven W. Zucker

Can artificial intelligence unlock the secrets of the human brain? How do the inner mechanisms of deep learning models relate to our neural circuits? Is it possible to enhance AI by tapping into the power of brain recordings? These…

Neurons and Cognition · Quantitative Biology 2024-12-31 Subba Reddy Oota , Zijiao Chen , Manish Gupta , Raju S. Bapi , Gael Jobard , Frederic Alexandre , Xavier Hinaut

Understanding how the brain represents visual information is a fundamental challenge in neuroscience and artificial intelligence. While AI-driven decoding of neural data has provided insights into the human visual system, integrating…

Neural and Evolutionary Computing · Computer Science 2025-10-07 Dongyang Li , Haoyang Qin , Mingyang Wu , Chen Wei , Quanying Liu

Modern scientific fields face the challenge of integrating a wealth of data, analyses, and results. We recently showed that a neglect of this integration can lead to circular analyses and redundant explanations. Here, we help advance…

Neurons and Cognition · Quantitative Biology 2025-08-15 Mika Rubinov

Despite the centrality of the notion of representation in neuroscience, the field lacks a unified framework for the concepts used to characterize representation, leading to disparate use of both terminology and measures associated with it.…

Neurons and Cognition · Quantitative Biology 2026-04-27 Stephan Pohl , Edgar Y. Walker , David L. Barack , Jennifer Lee , Rachel N. Denison , Ned Block , Florent Meyniel , Wei Ji Ma

By leveraging contrastive learning, clustering, and other pretext tasks, unsupervised methods for learning image representations have reached impressive results on standard benchmarks. The result has been a crowded field - many methods with…

Computer Vision and Pattern Recognition · Computer Science 2022-06-17 Matthew Gwilliam , Abhinav Shrivastava

Recent strides in the field of neural computation has seen the adoption of Winner Take All (WTA) circuits to facilitate the unification of hierarchical Bayesian inference and spiking neural networks as a neurobiologically plausible model of…

Neural and Evolutionary Computing · Computer Science 2024-01-22 Charles Theodore Kent , Leila Bagheriye , Johan Kwisthout

What can representational similarity matrices (RSMs) tell us about a neural code? As the popularity of these summary statistics grows, so too does the need for a more complete characterization of their properties. Here, we show that…

Neurons and Cognition · Quantitative Biology 2026-05-21 Farhad Pashakhanloo , Jacob A. Zavatone-Veth

How do we know if two systems - biological or artificial - process information in a similar way? Similarity measures such as linear regression, Centered Kernel Alignment (CKA), Normalized Bures Similarity (NBS), and angular Procrustes…

Neurons and Cognition · Quantitative Biology 2024-12-31 Nathan Cloos , Moufan Li , Markus Siegel , Scott L. Brincat , Earl K. Miller , Guangyu Robert Yang , Christopher J. Cueva

Neural networks encode inputs as high-dimensional vectors, known as representations, that capture how models process data by encoding task-relevant structure and semantics. Representation alignment refers to the degree to which different…

Computational Geometry · Computer Science 2026-05-26 Xinyuan Yan , Rita Sevastjanova , Mennatallah El-Assady , Bei Wang

Comparing representations across neural networks is challenging because representations admit symmetries, such as arbitrary reordering of units or rotations of activation space, that obscure underlying equivalence between models. We…

Machine Learning · Computer Science 2026-02-11 Shreya Saha , Zoe Wanying He , Meenakshi Khosla