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Related papers: Decoding Alignment without Encoding Alignment: A c…

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In this paper, we define and apply representational stability analysis (ReStA), an intuitive way of analyzing neural language models. ReStA is a variant of the popular representational similarity analysis (RSA) in cognitive neuroscience.…

Artificial Intelligence · Computer Science 2019-06-06 Samira Abnar , Lisa Beinborn , Rochelle Choenni , Willem Zuidema

Existing evaluation protocols for brain visual decoding predominantly rely on coarse metrics that obscure inter-model differences, lack neuroscientific foundation, and fail to capture fine-grained visual distinctions. To address these…

Computer Vision and Pattern Recognition · Computer Science 2025-12-02 Weihao Xia , Cengiz Oztireli

The diversity of cognitive deficits and neuropathological processes associated with dementias has encouraged divergence in pathophysiological explanations of disease. Here, we review an alternative framework that emphasises convergent…

Neurons and Cognition · Quantitative Biology 2020-06-12 Ece Kocagoncu , Anastasia Klimovich-Gray , Laura E Hughes , James B Rowe

Embedding-based similarity metrics between text sequences can be influenced not just by the content dimensions we most care about, but can also be biased by spurious attributes like the text's source or language. These document confounders…

Computation and Language · Computer Science 2025-09-25 Yu Fan , Yang Tian , Shauli Ravfogel , Mrinmaya Sachan , Elliott Ash , Alexander Hoyle

To understand sensory coding, we must ask not only how much information neurons encode, but also what that information is about. This requires decomposing mutual information into contributions from individual stimuli and stimulus features:…

Neurons and Cognition · Quantitative Biology 2025-10-23 Steeve Laquitaine , Simone Azeglio , Carlo Paris , Ulisse Ferrari , Matthew Chalk

Effective analysis in neuroscience benefits significantly from robust conceptual frameworks. Traditional metrics of interbrain synchrony in social neuroscience typically depend on fixed, correlation-based approaches, restricting their…

Neurons and Cognition · Quantitative Biology 2025-12-01 Nicolás Hinrichs , Noah Guzmán , Melanie Weber

Multi-modal Magnetic Resonance Imaging (MRI) offers complementary diagnostic information, but some modalities are limited by the long scanning time. To accelerate the whole acquisition process, MRI reconstruction of one modality from highly…

Image and Video Processing · Electrical Eng. & Systems 2025-01-09 Hao Zhang , Qi Wang , Jun Shi , Shihui Ying , Zhijie Wen

Many cognitive neuroscience studies use large feature sets to predict and interpret brain activity patterns. Feature sets take many forms, from human stimulus annotations to representations in deep neural networks. Of crucial importance in…

Neurons and Cognition · Quantitative Biology 2022-12-07 Anna A. Ivanova , Martin Schrimpf , Stefano Anzellotti , Noga Zaslavsky , Evelina Fedorenko , Leyla Isik

Visual decoding from electroencephalography (EEG) has emerged as a highly promising avenue for non-invasive brain-computer interfaces (BCIs). Existing EEG-based decoding methods predominantly align brain signals with the final-layer…

Computer Vision and Pattern Recognition · Computer Science 2026-03-10 Jingyi Tang , Shuai Jiang , Fei Su , Zhicheng Zhao

Efficient continual learning in humans is enabled by a rich set of neurophysiological mechanisms and interactions between multiple memory systems. The brain efficiently encodes information in non-overlapping sparse codes, which facilitates…

Neural and Evolutionary Computing · Computer Science 2023-01-13 Fahad Sarfraz , Elahe Arani , Bahram Zonooz

Encoding the distance between locations in space is essential for accurate navigation. Grid cells, a functional class of neurons in medial entorhinal cortex, are believed to support this computation. However, existing theories of how…

Neurons and Cognition · Quantitative Biology 2025-11-12 Pritipriya Dasbehera , Akshunna S. Dogra , William T. Redman

Meta-learning aims to develop algorithms that can learn from other learning algorithms to adapt to new and changing environments. This requires a model of how other learning algorithms operate and perform in different contexts, which is…

Machine Learning · Computer Science 2023-05-23 Yuwei Sun

Cognition involves dynamic reconfiguration of functional brain networks at sub-second time scale. A precise tracking of these reconfigurations to categorize visual objects remains elusive. Here, we use dense electroencephalography (EEG)…

Neurons and Cognition · Quantitative Biology 2017-06-05 Ahmad Mheich , Mahmoud Hassan , Fabrice Wendling

This paper investigates contextual word representation models from the lens of similarity analysis. Given a collection of trained models, we measure the similarity of their internal representations and attention. Critically, these models…

Computation and Language · Computer Science 2020-05-05 John M. Wu , Yonatan Belinkov , Hassan Sajjad , Nadir Durrani , Fahim Dalvi , James Glass

A central question in computational neuroscience is whether the learning rule used to train a neural network determines how well its internal representations align with those of the human visual cortex. We present a systematic comparison of…

Machine Learning · Computer Science 2026-04-30 Nils Leutenegger

We explore encoding brain symmetry into a neural network for a brain tumor segmentation task. A healthy human brain is symmetric at a high level of abstraction, and the high-level asymmetric parts are more likely to be tumor regions. Paying…

Computer Vision and Pattern Recognition · Computer Science 2017-11-20 Hejia Zhang , Xia Zhu , Theodore L. Willke

Sequences of nucleotides (for DNA and RNA) or amino acids (for proteins) are central objects in biology. Among the most important computational problems is that of sequence alignment, i.e. arranging sequences from different organisms in…

Quantitative Methods · Quantitative Biology 2020-12-08 Anna Paola Muntoni , Andrea Pagnani , Martin Weigt , Francesco Zamponi

Brain decoding algorithms form an important part of the arsenal of analysis tools available to neuroscientists, allowing for a more detailed study of the kind of information represented in patterns of cortical activity. While most current…

Quantitative Methods · Quantitative Biology 2017-08-17 R. S. van Bergen , J. F. M. Jehee

Determining the similarities and differences between humans and artificial intelligence (AI) is an important goal both in computational cognitive neuroscience and machine learning, promising a deeper understanding of human cognition and…

Computer Vision and Pattern Recognition · Computer Science 2025-01-28 Florian P. Mahner , Lukas Muttenthaler , Umut Güçlü , Martin N. Hebart

We present the self-encoder, a neural network trained to guess the identity of each data sample. Despite its simplicity, it learns a very useful representation of data, in a self-supervised way. Specifically, the self-encoder learns to…

Machine Learning · Computer Science 2023-06-27 Armand Boschin , Thomas Bonald , Marc Jeanmougin
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