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We investigate composite biopolymer networks composed of co-polymerized fibrin and gelatin networks and perform rheological measurements over a broad parameter space including strain amplitudes that go beyond the linear response regime. One…

Soft Condensed Matter · Physics 2025-08-14 Wayan A. Fontaine-Seiler , Gavin J. Donley , Emanuela Del Gado , Daniel L. Blair

We study creep flow and yielding of particulate depletion gels under constant shear stress, combining data on different length and time scales. We characterise the breakage of meso-scale strands in the gel. Breakage events are distributed…

Soft Condensed Matter · Physics 2024-08-14 Himangsu Bhaumik , Tanniemola B. Liverpool , C. Patrick Royall , Robert L. Jack

Within the frame of an effective, coarse-grained hydrophobic-polar protein model, we employ multicanonical Monte Carlo simulations to investigate free-energy landscapes and folding channels of exemplified heteropolymer sequences, which are…

Soft Condensed Matter · Physics 2009-11-13 Stefan Schnabel , Michael Bachmann , Wolfhard Janke

Understanding how interparticle interactions govern phase behavior is central to controlling self-organization in multicomponent soft-matter systems. In particular, the role of cross-interactions between unlike components remains…

Soft Condensed Matter · Physics 2026-03-03 Umesh Dhumal

Metastable gels formed by weakly attractive colloidal particles display a distinctive two-stage time-dependent settling behavior under their own weight. Initially a space-spanning network is formed that for a characteristic time, which we…

Soft Condensed Matter · Physics 2015-05-30 Paul Bartlett , Lisa J. Teece , Malcolm A. Faers

We report molecular dynamics simulations of a gel-forming mixture of ellipsoidal patchy particles with different functionality. We show that in this model, which disfavors the formation of bond-loops, elapsed time during irreversible…

Disordered Systems and Neural Networks · Physics 2009-03-09 Silvia Corezzi , Cristiano De Michele , Emanuela Zaccarelli , Piero Tartaglia , Francesco Sciortino

Magnetic nanoparticles in a colloidal solution self-assemble in various aligned structures, which has a profound influence on the flow behavior. However, the precise role of the microstructure in the development of the rheological response…

Soft Condensed Matter · Physics 2017-04-25 Dmitry Zablotsky , Elmars Blums , Hans J. Herrmann

We develop a new quantitative molecular theory of liquid-phase dipolar polymer gels. We model monomer units of the polymer network as a couple of charged sites separated by a fluctuating distance. For the first time, within the random phase…

Soft Condensed Matter · Physics 2021-03-09 Yury A. Budkov , Nikolai N. Kalikin , Andrei L. Kolesnikov

The melting transitions of a colloidal lattice confined to a two-dimensional ($2D$) periodic substrate of square symmetry are studied using Monte Carlo simulations. When the strengths of interparticle and particle-substrate interactions are…

Statistical Mechanics · Physics 2025-10-02 Akhilesh M P , Toby Joseph

We introduce and numerically study a model designed to mimic the bulk behavior of a system composed of single-stranded DNA dendrimers. Complementarity of the base sequences of different strands results in the formation of strong cooperative…

Soft Condensed Matter · Physics 2009-11-11 Francis W. Starr , Francesco Sciortino

We examine the dynamics of two-dimensional colloidal systems using numerical simulations of a system with a drive applied to a thin region in the middle of the sample to produce a local shear. For a monodisperse colloidal assembly, we find…

Soft Condensed Matter · Physics 2015-06-11 A. Libal , B. M. Csiki , C. J. Olson Reichhardt , C. Reichhardt

During the last 3 years, our group has investigated extensively the complexation mechanism between neutral-polyelectrolyte block copolymers with oppositely charged species. These species are surfactant micelles, multivalent counterions and…

Soft Condensed Matter · Physics 2007-05-23 J. -F. Berret , P. Herve , M. Morvan , K. Yokota , M. Destarac , J. Oberdisse , I. Grillo , R. Schweins

By means of molecular dynamics, we study a model system for colloidal suspensions where the interaction is based on a competition between attraction and repulsion. At low temperatures the relaxation time $\tau$ first increases as a power…

Soft Condensed Matter · Physics 2009-11-10 A. de Candia , E. Del Gado , A. Fierro , N. Sator , A. Coniglio

In a companion paper, we put forth a thermodynamic model for complex formation via a chemical reaction involving multiple macromolecular species, which may subsequently undergo liquid-liquid phase separation and a further transition into a…

Biological Physics · Physics 2024-07-26 Ruoyao Zhang , Sheng Mao , Mikko P. Haataja

We present direct evidence for a reversible phase transition of DNA-linked colloidal gold assemblies. Transmission electron microscopy and optical absorption spectroscopy are used to monitor the colloidal gold phase transition, whose…

Biological Physics · Physics 2007-05-23 Young Sun , Nolan C. Harris , Ching-Hwa Kiang

The function of a real network depends not only on the reliability of its own components, but is affected also by the simultaneous operation of other real networks coupled with it. Robustness of systems composed of interdependent network…

Physics and Society · Physics 2015-07-10 Filippo Radicchi

We report surface shear rheological measurements on dense insoluble monolayers of micron sized colloidal spheres at the oil/water interface and of the protein $\beta$-lactoglobulin at the air/water surface. As expected, the elastic modulus…

Soft Condensed Matter · Physics 2009-11-10 Pietro Cicuta , Edward J. Stancik , Gerald G. Fuller

We analyze the behavior of supercooled fluids under shear both theoretically and numerically. Theoretically, we generalize the mode-coupling theory of supercooled fluids to systems under stationary shear flow. Our starting point is the set…

Soft Condensed Matter · Physics 2009-11-10 Kunimasa Miyazaki , David R. Reichman , Ryoichi Yamamoto

Multiplex networks are convenient mathematical representations for many real-world -- biological, social, and technological -- systems of interacting elements, where pairwise interactions among elements have different flavors. Previous…

Physics and Society · Physics 2020-05-26 Saeed Osat , Filippo Radicchi , Fragkiskos Papadopoulos

The multicomponent coagulation equation is a generalisation of the Smoluchowski coagulation equation in which size of a particle is described by a vector. As with the original Smoluchowski equation, the multicomponent coagulation equation…

Mathematical Physics · Physics 2024-01-24 Jochem Hoogendijk , Ivan Kryven , Camillo Schenone