Two-State Folding, Folding through Intermediates, and Metastability in a Minimalistic Hydrophobic-Polar Model for Proteins
Soft Condensed Matter
2009-11-13 v1 Biomolecules
Abstract
Within the frame of an effective, coarse-grained hydrophobic-polar protein model, we employ multicanonical Monte Carlo simulations to investigate free-energy landscapes and folding channels of exemplified heteropolymer sequences, which are permutations of each other. Despite the simplicity of the model, the knowledge of the free-energy landscape in dependence of a suitable system order parameter enables us to reveal complex folding characteristics known from real bioproteins and synthetic peptides, such as two-state folding, folding through weakly stable intermediates, and glassy metastability.
Keywords
Cite
@article{arxiv.0710.4578,
title = {Two-State Folding, Folding through Intermediates, and Metastability in a Minimalistic Hydrophobic-Polar Model for Proteins},
author = {Stefan Schnabel and Michael Bachmann and Wolfhard Janke},
journal= {arXiv preprint arXiv:0710.4578},
year = {2009}
}
Comments
10 pages, 1 figure