English

Two-State Folding, Folding through Intermediates, and Metastability in a Minimalistic Hydrophobic-Polar Model for Proteins

Soft Condensed Matter 2009-11-13 v1 Biomolecules

Abstract

Within the frame of an effective, coarse-grained hydrophobic-polar protein model, we employ multicanonical Monte Carlo simulations to investigate free-energy landscapes and folding channels of exemplified heteropolymer sequences, which are permutations of each other. Despite the simplicity of the model, the knowledge of the free-energy landscape in dependence of a suitable system order parameter enables us to reveal complex folding characteristics known from real bioproteins and synthetic peptides, such as two-state folding, folding through weakly stable intermediates, and glassy metastability.

Keywords

Cite

@article{arxiv.0710.4578,
  title  = {Two-State Folding, Folding through Intermediates, and Metastability in a Minimalistic Hydrophobic-Polar Model for Proteins},
  author = {Stefan Schnabel and Michael Bachmann and Wolfhard Janke},
  journal= {arXiv preprint arXiv:0710.4578},
  year   = {2009}
}

Comments

10 pages, 1 figure