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Biomedical triple extraction systems aim to automatically extract biomedical entities and relations between entities. The exploration of applying large language models (LLM) to triple extraction is still relatively unexplored. In this work,…

Computation and Language · Computer Science 2024-04-30 Mingchen Li , Huixue Zhou , Rui Zhang

Extracting key information from scientific papers has the potential to help researchers work more efficiently and accelerate the pace of scientific progress. Over the last few years, research on Scientific Information Extraction (SciIE)…

Computation and Language · Computer Science 2023-12-19 Yuhan Li , Jian Wu , Zhiwei Yu , Börje F. Karlsson , Wei Shen , Manabu Okumura , Chin-Yew Lin

This study is dedicated to assessing the capabilities of large language models (LLMs) such as GPT-3.5-Turbo, GPT-4, and GPT-4-Turbo in extracting structured information from scientific documents in materials science. To this end, we…

Computation and Language · Computer Science 2024-06-03 Luca Foppiano , Guillaume Lambard , Toshiyuki Amagasa , Masashi Ishii

Knowledgebase question answering systems are heavily dependent on relation extraction and linking modules. However, the task of extracting and linking relations from text to knowledgebases faces two primary challenges; the ambiguity of…

Benchmarks like SWE-bench have standardized the evaluation of Large Language Models (LLMs) on repository-level software engineering tasks. However, these efforts remain limited by manual curation, static datasets, and a focus on…

In recent years, the importance of research data and the need to archive and to share it in the scientific community have increased enormously. This introduces a whole new set of challenges for digital libraries. In the social sciences…

Digital Libraries · Computer Science 2017-05-03 Nadine Dulisch , Andreas Oskar Kempf , Philipp Schaer

Extracting biographical information from online documents is a popular research topic among the information extraction (IE) community. Various natural language processing (NLP) techniques such as text classification, text summarisation and…

Information Retrieval · Computer Science 2022-05-03 Alistair Plum , Tharindu Ranasinghe , Spencer Jones , Constantin Orasan , Ruslan Mitkov

Extracting relationships and interactions between different biological entities is still an extremely challenging problem but has not received much attention as much as extraction in other generic domains. In addition to the lack of…

Computation and Language · Computer Science 2020-06-02 Abhinav Bhatt , Kaustubh D. Dhole

Assessing the quality of scientific research is essential for scholarly communication, yet widely used approaches face limitations in scalability, subjectivity, and time delay. Recent advances in large language models (LLMs) offer new…

Information Retrieval · Computer Science 2026-04-21 Mengjia Wu , Yi Zhang , Robin Haunschild , Lutz Bornmann

With the rapid growth of Web-based academic publications, more and more papers are being published annually, making it increasingly difficult to find relevant prior work. Citation prediction aims to automatically suggest appropriate…

While a source sentence can be translated in many ways, most machine translation (MT) models are trained with only a single reference. Previous work has shown that using synthetic paraphrases can improve MT. This paper investigates best…

Computation and Language · Computer Science 2025-02-27 Si Wu , John Wieting , David A. Smith

Large language models (LLMs) are increasingly expected to go beyond simple factual queries toward Deep Research-tasks that require decomposing questions into sub-problems, coordinating multi-step reasoning, and synthesizing evidence from…

Computation and Language · Computer Science 2025-09-03 Ziyi Xia , Kun Luo , Hongjin Qian , Zheng Liu

Automatically extracting key information from scientific documents has the potential to help scientists work more efficiently and accelerate the pace of scientific progress. Prior work has considered extracting document-level entity…

Digital Libraries · Computer Science 2021-06-04 Vijay Viswanathan , Graham Neubig , Pengfei Liu

This paper describes a rapid feasibility study of using GPT-4, a large language model (LLM), to (semi)automate data extraction in systematic reviews. Despite the recent surge of interest in LLMs there is still a lack of understanding of how…

Computation and Language · Computer Science 2025-02-14 Lena Schmidt , Kaitlyn Hair , Sergio Graziosi , Fiona Campbell , Claudia Kapp , Alireza Khanteymoori , Dawn Craig , Mark Engelbert , James Thomas

A key type of resource needed to address global inequalities in knowledge production and dissemination is a tool that can support journals in understanding how knowledge circulates. The absence of such a tool has resulted in comparatively…

Computation and Language · Computer Science 2025-05-23 Parth Sarin , Juan Pablo Alperin

Extracting relations from scientific literature is a fundamental task in biomedical NLP because entities and relations among them drive hypothesis generation and knowledge discovery. As literature grows rapidly, relation extraction (RE) is…

Computation and Language · Computer Science 2026-01-15 Aviv Brokman , Xuguang Ai , Yuhang Jiang , Shashank Gupta , Ramakanth Kavuluru

The advancement of large language models (LLMs) has led to a greater challenge of having a rigorous and systematic evaluation of complex tasks performed, especially in enterprise applications. Therefore, LLMs need to be able to benchmark…

Computation and Language · Computer Science 2024-10-18 Bing Zhang , Mikio Takeuchi , Ryo Kawahara , Shubhi Asthana , Md. Maruf Hossain , Guang-Jie Ren , Kate Soule , Yada Zhu

Automatic extraction of procedural graphs from documents creates a low-cost way for users to easily understand a complex procedure by skimming visual graphs. Despite the progress in recent studies, it remains unanswered: whether the…

Computation and Language · Computer Science 2024-08-09 Weihong Du , Wenrui Liao , Hongru Liang , Wenqiang Lei

Science progresses by building upon the prior body of knowledge documented in scientific publications. The acceleration of research makes it hard to stay up-to-date with the recent developments and to summarize the ever-growing body of…

Computation and Language · Computer Science 2023-11-07 Martin Funkquist , Ilia Kuznetsov , Yufang Hou , Iryna Gurevych

The application of large language models (LLMs) to healthcare information extraction has emerged as a promising approach. This study evaluates the classification performance of five open-source LLMs: GEMMA-3-27B-IT, LLAMA3-70B, LLAMA4-109B,…

Computation and Language · Computer Science 2025-05-09 Yuting Guo , Abeed Sarker