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Large language models (LLMs) have recently shown strong progress on scientific reasoning, yet two major bottlenecks remain. First, explicit retrieval fragments reasoning, imposing a hidden "tool tax" of extra tokens and steps. Second,…

Named Entity Recognition (NER) is a core natural language processing task in which pre-trained language models have shown remarkable performance. However, standard benchmarks like CoNLL 2003 do not address many of the challenges that…

Computation and Language · Computer Science 2023-05-01 Iker García-Ferrero , Jon Ander Campos , Oscar Sainz , Ander Salaberria , Dan Roth

Chunking strategies significantly impact the effectiveness of Retrieval-Augmented Generation (RAG) systems. Existing methods operate within fixed-granularity paradigms that rely on static boundary identification, limiting their adaptability…

Computation and Language · Computer Science 2026-02-03 Wenxuan Zhang , Yuan-Hao Jiang , Yang Cao , Yonghe Wu

Modeling genomic sequences faces two unsolved challenges: the information density varies widely across different regions, while there is no clearly defined minimum vocabulary unit. Relying on either four primitive bases or independently…

Genomics · Quantitative Biology 2025-11-20 Siyuan Li , Kai Yu , Anna Wang , Zicheng Liu , Chang Yu , Jingbo Zhou , Qirong Yang , Yucheng Guo , Xiaoming Zhang , Stan Z. Li

The emotion recognition in conversation (ERC) task aims to predict the emotion label of an utterance in a conversation. Since the dependencies between speakers are complex and dynamic, which consist of intra- and inter-speaker dependencies,…

Computation and Language · Computer Science 2022-06-08 Yinan Bao , Qianwen Ma , Lingwei Wei , Wei Zhou , Songlin Hu

Video Referring Expression Comprehension (REC) aims to localize a target object in videos based on the queried natural language. Recent improvements in video REC have been made using Transformer-based methods with learnable queries.…

Computer Vision and Pattern Recognition · Computer Science 2023-10-26 Ji Jiang , Meng Cao , Tengtao Song , Long Chen , Yi Wang , Yuexian Zou

A class of brain computer interfaces (BCIs) employs noninvasive recordings of electroencephalography (EEG) signals to enable users with severe speech and motor impairments to interact with their environment and social network. For example,…

Human-Computer Interaction · Computer Science 2017-10-11 Mohammad Moghadamfalahi , Murat Akcakaya , Hooman Nezamfar , Jamshid Sourati , Deniz Erdogmus

The data scarcity problem in Electroencephalography (EEG) based affective computing results into difficulty in building an effective model with high accuracy and stability using machine learning algorithms especially deep learning models.…

Machine Learning · Computer Science 2021-09-09 Zhi Zhang , Sheng-hua Zhong , Yan Liu

Facial emotional recognition is one of the essential tools used by recognition psychology to diagnose patients. Face and facial emotional recognition are areas where machine learning is excelling. Facial Emotion Recognition in an…

Computer Vision and Pattern Recognition · Computer Science 2022-08-08 Nitesh Banskota , Abeer Alsadoon , P. W. C. Prasad , Ahmed Dawoud , Tarik A. Rashid , Omar Hisham Alsadoon

Reaction diagram parsing is the task of extracting reaction schemes from a diagram in the chemistry literature. The reaction diagrams can be arbitrarily complex, thus robustly parsing them into structured data is an open challenge. In this…

Computation and Language · Computer Science 2023-05-22 Yujie Qian , Jiang Guo , Zhengkai Tu , Connor W. Coley , Regina Barzilay

Accents play a pivotal role in shaping human communication, enhancing our ability to convey and comprehend messages with clarity and cultural nuance. While there has been significant progress in Automatic Speech Recognition (ASR),…

Computation and Language · Computer Science 2025-06-24 Bonaventure F. P. Dossou

Fine-tuning Pre-trained protein language models (PLMs) has emerged as a prominent strategy for enhancing downstream prediction tasks, often outperforming traditional supervised learning approaches. As a widely applied powerful technique in…

Computation and Language · Computer Science 2024-04-24 Yang Tan , Mingchen Li , Bingxin Zhou , Bozitao Zhong , Lirong Zheng , Pan Tan , Ziyi Zhou , Huiqun Yu , Guisheng Fan , Liang Hong

Emotion Recognition in Conversations (ERC) facilitates a deeper understanding of the emotions conveyed by speakers in each utterance within a conversation. Recently, Graph Neural Networks (GNNs) have demonstrated their strengths in…

Computation and Language · Computer Science 2024-12-24 Cuong Tran Van , Thanh V. T. Tran , Van Nguyen , Truong Son Hy

Handwritten mathematical expression recognition (HMER) is a challenging task that has many potential applications. Recent methods for HMER have achieved outstanding performance with an encoder-decoder architecture. However, these methods…

Computer Vision and Pattern Recognition · Computer Science 2022-06-08 Ye Yuan , Xiao Liu , Wondimu Dikubab , Hui Liu , Zhilong Ji , Zhongqin Wu , Xiang Bai

Enhancing the mathematical reasoning capabilities of Large Language Models (LLMs) is of great scientific and practical significance. Researchers typically employ process-supervised reward models (PRMs) to guide the reasoning process,…

Computation and Language · Computer Science 2025-07-24 Wei Sun , Qianlong Du , Fuwei Cui , Jiajun Zhang

Computational screening of naturally occurring proteins has the potential to identify efficient catalysts among the hundreds of millions of sequences that remain uncharacterized. Current experimental methods remain time, cost and labor…

Quantitative Methods · Quantitative Biology 2024-02-13 Peter G. Mikhael , Itamar Chinn , Regina Barzilay

To interpret the genetic profile present in a patient sample, it is necessary to know which mutations have important roles in the development of the corresponding cancer type. Named entity recognition is a core step in the text mining…

Computation and Language · Computer Science 2021-06-16 Jiarun Cao , Elke M van Veen , Niels Peek , Andrew G Renehan , Sophia Ananiadou

The state-of-the-art named entity recognition (NER) systems are supervised machine learning models that require large amounts of manually annotated data to achieve high accuracy. However, annotating NER data by human is expensive and…

Computation and Language · Computer Science 2019-11-04 Jian Ni , Georgiana Dinu , Radu Florian

We introduce KiNetX, a fully automated meta-algorithm for the kinetic analysis of complex chemical reaction networks derived from semi-accurate but efficient electronic structure calculations. It is designed to (i) accelerate the automated…

Chemical Physics · Physics 2019-01-11 Jonny Proppe , Markus Reiher

Deep learning has yielded state-of-the-art performance on many natural language processing tasks including named entity recognition (NER). However, this typically requires large amounts of labeled data. In this work, we demonstrate that the…

Computation and Language · Computer Science 2018-02-06 Yanyao Shen , Hyokun Yun , Zachary C. Lipton , Yakov Kronrod , Animashree Anandkumar