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In recent years, large language models (LLMs) have demonstrated remarkable generalization capabilities across various natural language processing (NLP) tasks. Similarly, graph foundation models (GFMs) have emerged as a promising direction…

Machine Learning · Computer Science 2025-05-20 Jianxiang Yu , Jiapeng Zhu , Hao Qian , Ziqi Liu , Zhiqiang Zhang , Xiang Li

Leveraging Large Language Models (LLMs) for Knowledge Graph Completion (KGC) is promising but hindered by a fundamental granularity mismatch. LLMs operate on fragmented token sequences, whereas entities are the fundamental units in…

Computation and Language · Computer Science 2026-02-27 Siyue Su , Jian Yang , Bo Li , Guanglin Niu

Graphs provide a unified representation of semantic content and relational structure, making them a natural fit for domains such as molecular modeling, citation networks, and social graphs. Meanwhile, large language models (LLMs) have…

Machine Learning · Computer Science 2026-05-04 Haotian Xu , Yuning You , Tengfei Ma

Large language models (LLMs) have recently been introduced to graph learning, aiming to extend their zero-shot generalization success to tasks where labeled graph data is scarce. Among these applications, inference over text-attributed…

Machine Learning · Computer Science 2025-06-10 Haoyu Wang , Shikun Liu , Rongzhe Wei , Pan Li

Graph plays a significant role in representing and analyzing complex relationships in real-world applications such as citation networks, social networks, and biological data. Recently, Large Language Models (LLMs), which have achieved…

Machine Learning · Computer Science 2024-04-25 Yuhan Li , Zhixun Li , Peisong Wang , Jia Li , Xiangguo Sun , Hong Cheng , Jeffrey Xu Yu

Large Language Models (LLMs) have shown strong capabilities in solving problems across domains, including graph-related tasks traditionally addressed by symbolic or algorithmic methods. In this work, we present a framework for structured…

Artificial Intelligence · Computer Science 2025-09-03 Govind Waghmare , Sumedh BG , Sonia Gupta , Srikanta Bedathur

Graph representation learning, involving both node features and graph structures, is crucial for real-world applications but often encounters pervasive noise. State-of-the-art methods typically address noise by focusing separately on node…

Machine Learning · Computer Science 2024-10-17 Guangxin Su , Yifan Zhu , Wenjie Zhang , Hanchen Wang , Ying Zhang

Handling graph data is one of the most difficult tasks. Traditional techniques, such as those based on geometry and matrix factorization, rely on assumptions about the data relations that become inadequate when handling large and complex…

Machine Learning · Computer Science 2024-04-15 Zhenyu Qian , Yiming Qian , Yuting Song , Fei Gao , Hai Jin , Chen Yu , Xia Xie

Graphs are a powerful tool for representing and analyzing complex relationships in real-world applications such as social networks, recommender systems, and computational finance. Reasoning on graphs is essential for drawing inferences…

Machine Learning · Computer Science 2023-10-10 Bahare Fatemi , Jonathan Halcrow , Bryan Perozzi

The integration of multi-omic data is pivotal for understanding complex diseases, but its high dimensionality and noise present significant challenges. Graph Neural Networks (GNNs) offer a robust framework for analyzing large-scale…

Quantitative Methods · Quantitative Biology 2024-12-23 Heming Zhang , Di Huang , Yixin Chen , Fuhai Li

Combining multiple knowledge graphs (KGs) across linguistic boundaries is a persistent challenge due to semantic heterogeneity and the complexity of graph environments. We propose a framework for cross-lingual graph fusion, leveraging the…

Computation and Language · Computer Science 2026-03-24 Kaung Myat Kyaw , Khush Agarwal , Jonathan Chan

Large language models (LLMs) demonstrate great potential for problems with implicit graphical structures, while recent works seek to enhance the graph reasoning capabilities of LLMs through specialized instruction tuning. The resulting…

Computation and Language · Computer Science 2024-10-14 Yizhuo Zhang , Heng Wang , Shangbin Feng , Zhaoxuan Tan , Xiaochuang Han , Tianxing He , Yulia Tsvetkov

Graph learning has become essential in various domains, including recommendation systems and social network analysis. Graph Neural Networks (GNNs) have emerged as promising techniques for encoding structural information and improving…

Machine Learning · Computer Science 2024-10-10 Lianghao Xia , Ben Kao , Chao Huang

Graph-structured data are the commonly used and have wide application scenarios in the real world. For these diverse applications, the vast variety of learning tasks, graph domains, and complex graph learning procedures present challenges…

Machine Learning · Computer Science 2024-02-26 Lanning Wei , Jun Gao , Huan Zhao , Quanming Yao

Large language models (LLMs) have presented significant opportunities to enhance various machine learning applications, including graph neural networks (GNNs). By leveraging the vast open-world knowledge within LLMs, we can more effectively…

Machine Learning · Computer Science 2025-02-18 Yuxia Wu , Shujie Li , Yuan Fang , Chuan Shi

Data augmentation is necessary for graph representation learning due to the scarcity and noise present in graph data. Most of the existing augmentation methods overlook the context information inherited from the dataset as they rely solely…

Machine Learning · Computer Science 2025-02-20 Yushi Feng , Tsai Hor Chan , Guosheng Yin , Lequan Yu

Foundation models, such as Large Language Models (LLMs) or Large Vision Models (LVMs), have emerged as one of the most powerful tools in the respective fields. However, unlike text and image data, graph data do not have a definitive…

Machine Learning · Computer Science 2025-04-28 Lecheng Kong , Jiarui Feng , Hao Liu , Chengsong Huang , Jiaxin Huang , Yixin Chen , Muhan Zhang

Graph Neural Networks (GNNs) have empowered the advance in graph-structured data analysis. Recently, the rise of Large Language Models (LLMs) like GPT-4 has heralded a new era in deep learning. However, their application to graph data poses…

Machine Learning · Computer Science 2024-04-12 Runjin Chen , Tong Zhao , Ajay Jaiswal , Neil Shah , Zhangyang Wang

Modern recommender systems aim to deeply understand users' complex preferences through their past interactions. While deep collaborative filtering approaches using Graph Neural Networks (GNNs) excel at capturing user-item relationships,…

Information Retrieval · Computer Science 2025-06-03 Yangqin Jiang , Yuhao Yang , Lianghao Xia , Da Luo , Kangyi Lin , Chao Huang

Large Language Models (LLMs) exhibit strong reasoning capabilities on structured tasks, yet the internal mechanisms underlying such behaviors remain poorly understood. Existing interpretation methods mainly focus on token-level…

Computation and Language · Computer Science 2026-02-02 Xinnan Dai , Xianxuan Long , Chung-Hsiang Lo , Kai Guo , Shenglai Zeng , Dongsheng Luo , Jiliang Tang
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