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Recent prevailing works on graph machine learning typically follow a similar methodology that involves designing advanced variants of graph neural networks (GNNs) to maintain the superior performance of GNNs on different graphs. In this…

Machine Learning · Computer Science 2024-06-07 Yiran Qiao , Xiang Ao , Yang Liu , Jiarong Xu , Xiaoqian Sun , Qing He

Graph neural networks (GNNs) are vulnerable to adversarial attacks, especially for topology perturbations, and many methods that improve the robustness of GNNs have received considerable attention. Recently, we have witnessed the…

Machine Learning · Computer Science 2024-12-25 Zhongjian Zhang , Xiao Wang , Huichi Zhou , Yue Yu , Mengmei Zhang , Cheng Yang , Chuan Shi

How can we best encode structured data into sequential form for use in large language models (LLMs)? In this work, we introduce a parameter-efficient method to explicitly represent structured data for LLMs. Our method, GraphToken, learns an…

Machine Learning · Computer Science 2024-02-09 Bryan Perozzi , Bahare Fatemi , Dustin Zelle , Anton Tsitsulin , Mehran Kazemi , Rami Al-Rfou , Jonathan Halcrow

Large language models (LLMs) have achieved remarkable success in natural language processing (NLP), demonstrating significant capabilities in processing and understanding text data. However, recent studies have identified limitations in…

Artificial Intelligence · Computer Science 2025-02-18 Qiming Wu , Zichen Chen , Will Corcoran , Misha Sra , Ambuj K. Singh

Large Language Models (LLMs) have achieved remarkable success across various domains. However, they still face significant challenges, including high computational costs for training and limitations in solving complex reasoning problems.…

Machine Learning · Computer Science 2025-05-20 Hang Gao , Chenhao Zhang , Tie Wang , Junsuo Zhao , Fengge Wu , Changwen Zheng , Huaping Liu

Large language models (LLMs) have achieved great success in many fields, and recent works have studied exploring LLMs for graph discriminative tasks such as node classification. However, the abilities of LLMs for graph generation remain…

Machine Learning · Computer Science 2024-03-22 Yang Yao , Xin Wang , Zeyang Zhang , Yijian Qin , Ziwei Zhang , Xu Chu , Yuekui Yang , Wenwu Zhu , Hong Mei

Large language models (LLMs) are being increasingly explored for graph tasks. Despite their remarkable success in text-based tasks, LLMs' capabilities in understanding explicit graph structures remain limited, particularly with large…

Machine Learning · Computer Science 2024-10-31 Sambhav Khurana , Xiner Li , Shurui Gui , Shuiwang Ji

Attention mechanisms are critical to the success of large language models (LLMs), driving significant advancements in multiple fields. However, for graph-structured data, which requires emphasis on topological connections, they fall short…

Artificial Intelligence · Computer Science 2025-05-06 Zhong Guan , Likang Wu , Hongke Zhao , Ming He , Jianpin Fan

The application of large language models (LLMs) to graph data has attracted a lot of attention recently. LLMs allow us to use deep contextual embeddings from pretrained models in text-attributed graphs, where shallow embeddings are often…

Artificial Intelligence · Computer Science 2025-02-19 Shima Khoshraftar , Niaz Abedini , Amir Hajian

Graph-structured data plays a vital role in numerous domains, such as social networks, citation networks, commonsense reasoning graphs and knowledge graphs. While graph neural networks have been employed for graph processing, recent…

Computation and Language · Computer Science 2026-05-19 Wooyoung Kim , Byungyoon Park , Wooju Kim

Recent advances in Vision-Language Models (VLMs) have shown promising capabilities in interpreting visualized graph data, offering a new perspective for graph-structured reasoning beyond traditional Graph Neural Networks (GNNs). However,…

Artificial Intelligence · Computer Science 2026-04-27 Qihang Ai , Ruizhou Li , Menghui Wang , Haiyun Jiang

Rich textual and topological information of textual graphs need to be modeled in real-world applications such as webpages, e-commerce, and academic articles. Practitioners have been long following the path of adopting a shallow text encoder…

Computation and Language · Computer Science 2024-07-25 Yun Zhu , Yaoke Wang , Haizhou Shi , Siliang Tang

Large language models (LLMs) have demonstrated remarkable capabilities across various domains, yet their application to relational deep learning (RDL) remains underexplored. Existing approaches adapt LLMs by traversing relational links…

Computation and Language · Computer Science 2025-06-09 Fang Wu , Vijay Prakash Dwivedi , Jure Leskovec

Language Models (LMs) are increasingly challenging the dominance of domain-specific models, such as Graph Neural Networks (GNNs) and Graph Transformers (GTs), in graph learning tasks. Following this trend, we propose a novel approach that…

Computation and Language · Computer Science 2026-01-27 Zhe Xu , Kaveh Hassani , Si Zhang , Hanqing Zeng , Michihiro Yasunaga , Limei Wang , Dongqi Fu , Ning Yao , Bo Long , Hanghang Tong

For large language models (LLMs), reasoning over graphs could help solve many problems. Prior work has tried to improve LLM graph reasoning by examining how best to serialize graphs as text and by combining GNNs and LLMs. However, the…

Machine Learning · Computer Science 2025-08-15 Sola Shirai , Kavitha Srinivas , Julian Dolby , Michael Katz , Horst Samulowitz , Shirin Sohrabi

Large Language Models (LLMs) have achieved remarkable success in natural language processing through strong semantic understanding and generation. However, their black-box nature limits structured and multi-hop reasoning. In contrast,…

Computation and Language · Computer Science 2025-10-27 Guangxin Su , Hanchen Wang , Jianwei Wang , Wenjie Zhang , Ying Zhang , Jian Pei

Multi-modal graphs, which integrate diverse multi-modal features and relations, are ubiquitous in real-world applications. However, existing multi-modal graph learning methods are typically trained from scratch for specific graph data and…

Machine Learning · Computer Science 2025-11-26 Xin Wang , Zeyang Zhang , Linxin Xiao , Haibo Chen , Chendi Ge , Wenwu Zhu

Despite the superior performance of large language models to generate natural language texts, it is hard to generate texts with correct logic according to a given task, due to the difficulties for neural models to capture implied rules from…

Computation and Language · Computer Science 2024-07-08 Fan Zhang , Kebing Jin , Hankz Hankui Zhuo

Graph Neural Networks (GNNs) have attracted immense attention in the past decade due to their numerous real-world applications built around graph-structured data. On the other hand, Large Language Models (LLMs) with extensive pretrained…

Large Language Models (LLMs) have recently emerged as a powerful paradigm for Knowledge Graph Completion (KGC), offering strong reasoning and generalization capabilities beyond traditional embedding-based approaches. However, existing…

Computation and Language · Computer Science 2025-10-14 Wenbin Guo , Xin Wang , Jiaoyan Chen , Lingbing Guo , Zhao Li , Zirui Chen
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